Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-138 496.5 369 100.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.8e-83 313.2 166 95.2
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.5e-81 307.4 161 94.4
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.5e-28 130.6 167 52.7
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 4.8e-27 126.3 178 49.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.1e-26 125.2 185 46.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.4e-26 124.0 185 47.0
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 5.3e-26 122.9 187 47.6
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.9e-24 117.1 162 53.1
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.4e-24 115.5 167 47.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.4e-23 114.8 164 51.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.4e-23 114.8 184 46.2
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.9e-23 114.4 157 51.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 3.2e-23 113.6 161 49.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 5.5e-23 112.8 158 50.6
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 7.1e-23 112.5 161 49.1
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 7.1e-23 112.5 190 41.1
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 9.3e-23 112.1 168 48.2
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.7e-22 110.5 161 46.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 3.5e-22 110.2 120 57.5
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 6.0e-22 109.4 162 47.5
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.0e-21 108.6 181 45.3
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.3e-21 107.5 169 44.4
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.7e-21 105.9 159 47.2
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.5e-20 104.0 164 49.4
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.3e-20 103.2 163 47.9
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 4.3e-20 103.2 161 44.7
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 7.4e-20 102.4 160 45.6
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.4e-20 102.4 164 47.6
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-19 101.3 159 44.7
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.1e-19 100.9 162 45.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.7e-19 100.1 167 46.1
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 4.8e-19 99.8 157 48.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.8e-19 99.8 178 44.4
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 6.2e-19 99.4 163 44.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 6.2e-19 99.4 162 45.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 8.2e-19 99.0 180 45.0
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.4e-18 98.2 181 41.4
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.8e-18 97.8 161 47.8
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 5.3e-18 96.3 164 45.7
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 6.9e-18 95.9 168 42.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 6.9e-18 95.9 162 43.8
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 2.6e-17 94.0 163 42.3
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 2.6e-17 94.0 161 44.7
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.4e-17 93.6 83 61.4
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 3.4e-17 93.6 153 45.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.0e-16 92.0 63 69.8
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.0e-16 92.0 154 42.9
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-16 91.3 218 36.7
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.2e-16 90.9 163 42.9
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.9e-16 90.5 207 39.6
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 3.8e-16 90.1 174 40.2
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.8e-16 90.1 221 36.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 5.0e-16 89.7 201 37.8
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.0e-16 89.7 81 59.3
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 5.0e-16 89.7 165 42.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 8.4e-16 89.0 186 39.2
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 8.4e-16 89.0 169 40.8
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.1e-15 88.6 221 35.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.9e-15 87.8 161 42.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.5e-15 87.4 198 38.9
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.5e-15 87.4 172 41.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.5e-15 87.4 72 61.1
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 5.5e-15 86.3 161 42.2
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.5e-15 86.3 179 40.8
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.2e-14 85.1 168 42.3
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.6e-14 84.7 189 39.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 2.1e-14 84.3 150 41.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.7e-14 84.0 194 38.1
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.7e-14 84.0 163 38.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.5e-14 83.6 170 42.4
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 6.1e-14 82.8 72 59.7
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 6.1e-14 82.8 72 59.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.8e-13 81.3 166 39.2
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.3e-13 80.9 152 38.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.9e-13 80.1 72 56.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.9e-13 80.1 64 65.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.9e-13 80.1 160 43.8
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 8.7e-13 79.0 159 40.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-12 78.6 169 34.9
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.5e-12 78.2 72 55.6
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.9e-12 77.8 199 34.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.5e-12 77.4 71 59.2
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-12 77.4 187 36.9
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.5e-12 77.4 189 36.0
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-12 77.0 72 56.9
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-12 77.0 72 56.9
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.3e-12 77.0 72 56.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-12 77.0 71 56.3
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 3.3e-12 77.0 70 60.0
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.3e-12 77.0 67 59.7
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 5.7e-12 76.3 71 57.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.7e-12 76.3 168 38.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 7.4e-12 75.9 72 55.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 7.4e-12 75.9 168 38.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 9.7e-12 75.5 66 59.1
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 3.7e-11 73.6 72 55.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-11 73.6 72 55.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-11 73.6 71 53.5
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.8e-11 73.2 53 66.0
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-10 72.0 72 52.8
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-10 71.6 72 55.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-10 71.6 72 56.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.8e-10 71.2 68 52.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-10 71.2 179 38.5
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 9.0e-10 68.9 50 72.0
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.5e-09 68.2 91 48.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-09 67.8 56 64.3
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.4e-09 67.0 189 36.0
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.4e-09 67.0 189 36.0
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.4e-09 67.0 189 36.0
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 5.9e-09 66.2 52 65.4
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.8e-08 63.5 136 40.4
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.1e-07 62.0 153 36.6
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.4e-07 61.6 185 35.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-07 60.5 62 54.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 3.2e-07 60.5 62 54.8
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.2e-07 59.3 52 57.7
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 3.6e-06 57.0 171 31.0
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 7.9e-06 55.8 140 40.0


User provided reference genes

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