Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A152G42 Lonicera japonica HOM05D000494 ORTHO05D009262 5.6e-36 153.7 74 100.0
Lj9A423T71 Lonicera japonica HOM05D000494 ORTHO05D009262 2.7e-14 81.6 128 43.0
MBI16_g25624_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D009262 6.0e-14 80.5 105 47.6
Eucgr.K02242 Eucalyptus grandis HOM05D000494 ORTHO05D009262 1.3e-13 79.3 121 44.6
Potri.015G043000 Populus trichocarpa HOM05D000494 ORTHO05D009262 1.8e-13 79.0 128 42.2
Sabra15G0042300 Salix brachista HOM05D000494 ORTHO05D009262 1.8e-13 79.0 128 42.2
CiPaw.16G089600 Carya illinoinensis HOM05D000494 ORTHO05D009262 2.3e-13 78.6 128 42.2
Dinv06087 Davidia involucrata HOM05D000494 ORTHO05D009262 2.3e-13 78.6 128 43.8
Psat0s3174g0120 Pisum sativum HOM05D000494 ORTHO05D009262 2.3e-13 78.6 128 43.0
arahy.Tifrunner.gnm1.ann1.D71CJ0 Arachis hypogaea HOM05D000028 ORTHO05D009262 3.9e-13 77.8 128 43.0
arahy.Tifrunner.gnm1.ann1.NQYF9R Arachis hypogaea HOM05D000028 ORTHO05D009262 3.9e-13 77.8 128 43.0
QL10p027065 Quercus lobata HOM05D000494 ORTHO05D009262 3.9e-13 77.8 128 43.0
Hund10298 Selenicereus undatus HOM05D000494 ORTHO05D009262 3.9e-13 77.8 127 42.5
Medtr6g081850 Medicago truncatula HOM05D000494 ORTHO05D009262 5.1e-13 77.4 128 42.2
PGR044G0620 Punica granatum HOM05D000494 ORTHO05D009262 6.7e-13 77.0 120 43.3
Sc12g0007430 Simmondsia chinensis HOM05D000494 ORTHO05D009262 6.7e-13 77.0 127 41.7
TPR.G38568 Trifolium pratense HOM05D000494 ORTHO05D009262 6.7e-13 77.0 128 43.0
GSVIVG01008355001 Vitis vinifera HOM05D000494 ORTHO05D009262 6.7e-13 77.0 128 41.4
Lalb_Chr14g0370851 Lupinus albus HOM05D000494 ORTHO05D009262 8.7e-13 76.6 128 43.0
Ah.11g045210 Amaranthus hybridus HOM05D000494 ORTHO05D009262 1.1e-12 76.3 127 42.5
Cc04_g06770 Coffea canephora HOM05D000494 ORTHO05D009262 1.5e-12 75.9 128 42.2
Actinidia02648 Actinidia chinensis HOM05D000494 ORTHO05D009262 2.5e-12 75.1 121 43.0
AT1G18030 Arabidopsis thaliana HOM05D000494 ORTHO05D009262 2.5e-12 75.1 127 39.4
Sed0009882 Sechium edule HOM05D000494 ORTHO05D009262 2.5e-12 75.1 128 41.4
Prupe.5G226800 Prunus persica HOM05D000494 ORTHO05D009262 3.3e-12 74.7 128 40.6
Duzib205G0345 Durio zibethinus HOM05D000494 ORTHO05D009262 4.3e-12 74.3 122 42.6
MD06G1222300 Malus domestica HOM05D000494 ORTHO05D009262 4.3e-12 74.3 128 39.1
PSO017G6974 Papaver somniferum HOM05D000494 ORTHO05D009262 4.3e-12 74.3 128 40.6
Atru.chr9.931 Acer truncatum HOM05D000494 ORTHO05D009262 5.6e-12 73.9 127 41.7
DCAR_015157 Daucus carota HOM05D000494 ORTHO05D009262 5.6e-12 73.9 128 41.4
Gohir.A11G006300 Gossypium hirsutum HOM05D000494 ORTHO05D009262 5.6e-12 73.9 122 42.6
Gohir.D11G005400 Gossypium hirsutum HOM05D000494 ORTHO05D009262 5.6e-12 73.9 122 42.6
Gorai.007G006600 Gossypium raimondii HOM05D000494 ORTHO05D009262 5.6e-12 73.9 122 42.6
Ciclev10008870m.g Citrus clementina HOM05D000494 ORTHO05D009262 7.4e-12 73.6 127 40.2
TAR371G0636 Trochodendron aralioides HOM05D000028 ORTHO05D009262 7.4e-12 73.6 128 41.4
TAR371G1023 Trochodendron aralioides HOM05D000494 ORTHO05D009262 7.4e-12 73.6 128 41.4
CAN.G1129.44 Capsicum annuum HOM05D000494 ORTHO05D009262 9.6e-12 73.2 128 38.3
MELO3C029743.2 Cucumis melo HOM05D000494 ORTHO05D009262 9.6e-12 73.2 127 40.9
Lj2g0008530 Lotus japonicus HOM05D000028 ORTHO05D009262 9.6e-12 73.2 128 40.6
Oeu024334.1 Olea europaea HOM05D000494 ORTHO05D009262 9.6e-12 73.2 128 40.6
Thecc.03G044700 Theobroma cacao HOM05D000494 ORTHO05D009262 9.6e-12 73.2 122 41.8
SGA_v2.0_scaffold168G38481 Striga asiatica HOM05D000494 ORTHO05D009262 1.3e-11 72.8 128 41.4
CARHR018620 Cardamine hirsuta HOM05D000494 ORTHO05D009262 2.1e-11 72.0 127 39.4
PSO478G1470 Papaver somniferum HOM05D000494 ORTHO05D009262 2.1e-11 72.0 128 39.8
THA.LOC104812157 Tarenaya hassleriana HOM05D000494 ORTHO05D009262 2.1e-11 72.0 128 39.1
Thhalv10007969m.g Eutrema salsugineum HOM05D000494 ORTHO05D009262 2.8e-11 71.6 127 38.6
Peaxi162Scf00683g00344 Petunia axillaris HOM05D000494 ORTHO05D009262 2.8e-11 71.6 128 39.1
AL1G30380 Arabidopsis lyrata HOM05D000494 ORTHO05D009262 3.7e-11 71.2 127 38.6
BcaB07g31833 Brassica carinata HOM05D000494 ORTHO05D009262 4.8e-11 70.9 127 38.6
BolC5t30335H Brassica oleracea HOM05D000494 ORTHO05D009262 4.8e-11 70.9 135 36.3
PGSC0003DMG400005741 Solanum tuberosum HOM05D000494 ORTHO05D009262 4.8e-11 70.9 128 39.1
BraA06t24541Z Brassica rapa HOM05D000494 ORTHO05D009262 6.2e-11 70.5 135 37.0
FAN13G0734 Fragaria x ananassa HOM05D000494 ORTHO05D009262 6.2e-11 70.5 127 39.4
Sopen03g037830 Solanum pennellii HOM05D000494 ORTHO05D009262 6.2e-11 70.5 128 38.3
Aa31LG7G3000 Aethionema arabicum HOM05D000494 ORTHO05D009262 8.1e-11 70.1 127 37.8
Nitab4.5_0005692g0040 Nicotiana tabacum HOM05D000494 ORTHO05D009262 8.1e-11 70.1 132 38.6
RcHm_v2.0_Chr7g0179231 Rosa chinensis HOM05D000494 ORTHO05D009262 8.1e-11 70.1 127 40.2
BcaC05g25699 Brassica carinata HOM05D000494 ORTHO05D009262 1.1e-10 69.7 127 37.0
HPP92_010119 Vanilla planifolia HOM05D000494 ORTHO05D009262 1.1e-10 69.7 126 38.9
HPP92_010196 Vanilla planifolia HOM05D000494 ORTHO05D009262 1.1e-10 69.7 126 38.9
ATR0807G037 Amborella trichopoda HOM05D000494 ORTHO05D009262 1.4e-10 69.3 126 38.1
A06p14110 Brassica napus HOM05D000494 ORTHO05D009262 1.4e-10 69.3 135 36.3
TWI15G0974 Tripterygium wilfordii HOM05D000494 ORTHO05D009262 1.4e-10 69.3 126 38.9
Zm00001eb309620 Zea mays HOM05D000494 ORTHO05D009262 1.4e-10 69.3 128 35.9
Aqoxy3G00173 Aquilegia oxysepala HOM05D000494 ORTHO05D009262 1.8e-10 68.9 127 37.0
Sp1g16060 Schrenkiella parvula HOM05D000494 ORTHO05D009262 1.8e-10 68.9 127 37.8
VMungo0464G0464 Vigna mungo HOM05D000494 ORTHO05D009262 1.8e-10 68.9 124 39.5
C05p16380 Brassica napus HOM05D000494 ORTHO05D009262 2.4e-10 68.6 135 35.6
FvH4_5g16840 Fragaria vesca HOM05D000494 ORTHO05D009262 3.1e-10 68.2 127 39.4
FAN18G2248 Fragaria x ananassa HOM05D000494 ORTHO05D009262 3.1e-10 68.2 127 39.4
Carub.0001s1771 Capsella rubella HOM05D000494 ORTHO05D009262 4.0e-10 67.8 127 37.0
Nn3g17988 Nelumbo nucifera HOM05D000494 ORTHO05D009262 6.9e-10 67.0 120 37.5
Nitab4.5_0001456g0040 Nicotiana tabacum HOM05D000494 ORTHO05D009262 9.0e-10 66.6 134 36.6
Os09g0314400 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D009262 1.2e-09 66.2 128 37.5
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 4.5e-09 64.3 103 40.8
CSS0032047 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D009262 5.8e-09 63.9 100 45.0
Migut.D01598 Erythranthe guttata HOM05D000494 ORTHO05D009262 5.8e-09 63.9 96 42.7
COL.COLO4_04276 Corchorus olitorius HOM05D000494 ORTHO05D009262 7.6e-09 63.5 154 32.5
Glyma.09G179200 Glycine max HOM05D000494 ORTHO05D009262 2.9e-08 61.6 126 34.9
SalBow1G8081 Salvia bowleyana HOM05D000494 ORTHO05D009262 6.5e-08 60.5 153 32.7
Rhsim08G0129400 Rhododendron simsii HOM05D000494 ORTHO05D009262 8.4e-08 60.1 100 41.0
Sabra15G0043700 Salix brachista HOM05D000494 ORTHO05D009262 2.5e-07 58.5 82 48.8
MBI16_g29816_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D009262 3.2e-07 58.2 93 41.9
EL10Ac5g11492 Beta vulgaris HOM05D000494 ORTHO05D009262 4.2e-07 57.8 99 39.4
Cpa.g.sc3.450 Carica papaya HOM05D000494 ORTHO05D009262 2.1e-06 55.5 44 65.9
Haze_18766 Corylus avellana HOM05D000494 ORTHO05D009262 2.7e-06 55.1 44 65.9
Manes.04G059650 Manihot esculenta HOM05D000494 ORTHO05D009262 3.5e-06 54.7 44 63.6
vmacro17518 Vaccinium macrocarpon HOM05D000494 ORTHO05D009262 6.0e-06 53.9 63 50.8


User provided reference genes

Program Settings