Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 9.0e-230 800.0 448 100.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.5e-160 567.8 453 75.1
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 3.2e-158 562.4 451 73.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 3.2e-158 562.4 451 73.8
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 3.0e-156 555.8 452 74.1
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.0e-153 545.4 471 71.3
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.4e-152 542.3 451 72.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 5.8e-152 541.6 448 73.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.2e-151 539.7 451 70.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.7e-151 538.9 449 70.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.6e-149 533.5 450 69.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 4.6e-149 531.9 453 70.2
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 6.0e-149 531.6 449 70.6
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 2.3e-148 529.6 450 70.7
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 3.0e-148 529.3 448 69.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.5e-147 526.9 450 70.2
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-147 526.6 449 69.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.2e-146 523.9 427 73.1
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.6e-146 523.5 449 68.6
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.1e-146 523.1 448 69.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.2e-146 521.5 449 68.8
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.2e-146 521.5 449 69.3
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.1e-145 520.8 450 69.3
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.8e-145 520.0 450 69.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.1e-145 519.2 442 71.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 8.9e-145 517.7 450 67.8
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.5e-144 516.9 450 70.0
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-144 516.9 449 69.3
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 2.6e-144 516.2 457 69.6
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.4e-142 509.6 449 69.5
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.2e-142 509.2 452 70.1
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.3e-140 503.1 452 68.4
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 4.3e-139 498.8 450 68.0
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 5.6e-139 498.4 439 70.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 5.6e-139 498.4 452 67.7
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 7.3e-139 498.0 449 65.0
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.6e-138 496.9 452 67.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 9.0e-137 491.1 458 66.2
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 9.0e-137 491.1 456 65.1
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.2e-136 490.7 451 68.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.0e-136 490.0 425 69.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.6e-136 489.6 456 66.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 3.4e-136 489.2 452 65.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 9.9e-136 487.6 443 68.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.8e-135 485.7 449 63.5
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 4.9e-135 485.3 450 63.6
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.4e-135 485.0 449 65.3
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.4e-134 483.0 445 64.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 9.3e-134 481.1 449 63.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.7e-133 479.6 449 63.3
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 3.5e-133 479.2 449 64.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 5.1e-132 475.3 451 63.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 6.6e-132 474.9 449 62.6
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.3e-131 472.6 448 63.6
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 7.3e-131 471.5 457 65.6
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 9.6e-131 471.1 459 62.7
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.4e-129 467.2 447 61.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.4e-129 467.2 451 62.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.1e-129 466.1 449 64.1
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 9.0e-129 464.5 449 61.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.0e-128 463.4 450 63.3
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 7.6e-128 461.5 449 63.3
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-127 460.3 389 69.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.9e-127 459.5 451 62.1
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 4.9e-127 458.8 452 62.8
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 6.4e-127 458.4 450 61.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 5.4e-126 455.3 467 59.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 7.1e-126 454.9 456 61.8
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 7.1e-126 454.9 450 60.7
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.1e-125 453.4 449 62.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.7e-125 453.0 449 60.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 3.3e-123 446.0 449 62.8
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.3e-123 445.7 445 61.3
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 5.6e-123 445.3 451 63.0
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.6e-123 445.3 451 61.0
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.1e-122 443.4 447 61.3
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.8e-122 443.0 449 61.0
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.8e-122 443.0 426 62.4
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 3.7e-122 442.6 462 60.4
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.2e-122 441.8 446 61.2
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 5.3e-121 438.7 446 60.8
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.4e-118 430.6 481 58.2
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.9e-118 430.3 446 59.4
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.2e-118 429.5 450 58.9
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 4.2e-118 429.1 446 59.6
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.7e-117 426.4 438 60.0
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.7e-117 426.4 438 60.0
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 6.0e-117 425.2 496 56.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 6.7e-116 421.8 448 59.2
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.8e-114 416.4 452 59.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.2e-114 414.8 328 73.2
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.0e-111 407.9 424 59.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 2.3e-108 396.7 449 57.2
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 3.8e-103 379.4 449 56.8
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.2e-102 376.3 449 56.1
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.0e-100 369.8 465 52.0
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.5e-96 355.9 366 62.8
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.3e-95 354.4 324 66.0
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 8.5e-95 351.7 371 57.7
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 3.2e-94 349.7 450 52.9
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 7.9e-93 345.1 463 50.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.3e-91 339.7 437 50.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.7e-90 336.3 400 55.0
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.5e-86 323.6 426 50.0
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.8e-84 317.4 468 48.7
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 8.8e-84 315.1 459 46.2
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 5.7e-83 312.4 392 51.0
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.7e-82 310.8 279 64.5
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.8e-81 307.4 424 50.2
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.2e-79 300.4 392 50.8
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.7e-75 285.8 280 60.7
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.9e-72 275.8 220 75.5
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.1e-69 267.3 230 68.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.3e-63 247.3 344 50.0
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.0e-63 246.1 250 61.2
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.7e-59 232.6 251 61.4
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 4.9e-58 229.6 275 57.1
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.4e-57 228.0 377 46.4
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-54 217.2 315 48.3
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-46 191.8 198 57.6
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.3e-44 184.1 382 37.2
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 9.8e-43 178.7 362 39.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.7e-42 177.9 455 34.3
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.2e-41 173.7 206 52.9
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.2e-41 173.7 274 46.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.5e-38 164.1 130 73.8
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-37 161.8 151 65.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.6e-37 161.4 454 32.2
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 8.3e-34 149.1 177 55.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-30 138.7 134 58.2
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-30 137.9 162 55.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-28 130.6 181 48.1
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 2.1e-24 117.9 206 43.7
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 2.1e-21 107.8 95 66.3
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 3.4e-19 100.5 149 48.3
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-18 98.6 67 80.6
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 7.9e-16 89.4 107 56.1
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-15 88.6 95 58.9
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.9e-15 87.0 54 87.0
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 3.3e-14 84.0 189 40.2
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 3.5e-08 63.9 37 81.1
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 7.4e-06 56.2 174 34.5


User provided reference genes

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