Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 3.0e-128 461.8 228 100.0
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.6e-89 333.2 305 60.3
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 2.1e-89 332.8 296 61.8
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.5e-89 332.0 294 60.9
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.5e-89 332.0 294 60.9
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.3e-88 330.1 299 60.2
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 8.7e-88 327.4 295 61.4
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 3.3e-87 325.5 294 60.9
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 2.8e-86 322.4 293 61.1
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 7.6e-84 314.3 297 57.9
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 1.1e-82 310.5 296 57.1
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 1.4e-82 310.1 293 57.7
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 1.9e-82 309.7 298 57.7
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 9.3e-82 307.4 295 57.3
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 2.1e-81 306.2 293 57.7
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 2.7e-81 305.8 301 55.5
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 1.0e-80 303.9 296 56.1
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 1.3e-80 303.5 293 57.3
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.8e-80 303.1 218 71.1
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 2.3e-80 302.8 297 56.2
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.3e-80 302.8 293 55.6
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.3e-80 302.8 293 55.6
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 2.3e-80 302.8 292 56.8
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 6.7e-80 301.2 268 59.7
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 6.7e-80 301.2 268 59.7
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 6.7e-80 301.2 293 55.3
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.1e-79 300.4 293 56.7
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 4.3e-79 298.5 322 53.4
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 1.3e-78 297.0 296 56.4
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.3e-78 297.0 293 54.9
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.6e-78 296.6 295 55.9
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 1.6e-78 296.6 296 55.1
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 1.6e-78 296.6 295 55.6
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.8e-78 295.8 301 53.5
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 1.1e-77 293.9 297 55.2
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 3.1e-77 292.4 287 56.8
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 5.3e-77 291.6 296 52.7
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 3.4e-76 288.9 295 54.2
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 7.7e-76 287.7 308 54.5
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 7.7e-76 287.7 290 55.2
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 2.2e-75 286.2 290 55.2
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 5.0e-75 285.0 295 56.3
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 6.5e-75 284.6 295 53.2
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 6.5e-75 284.6 298 53.7
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 8.5e-75 284.3 290 54.8
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 1.1e-74 283.9 296 54.1
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 1.4e-74 283.5 303 51.5
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.5e-74 282.7 303 51.2
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 2.5e-74 282.7 294 53.4
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 4.2e-74 282.0 295 55.9
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 7.2e-74 281.2 295 52.2
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 9.4e-74 280.8 300 52.7
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 9.4e-74 280.8 301 54.5
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.2e-73 280.4 295 51.9
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 1.2e-73 280.4 295 53.9
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 2.1e-73 279.6 297 52.5
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 3.6e-73 278.9 294 52.4
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.6e-73 278.5 297 52.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 4.6e-73 278.5 297 52.9
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.9e-73 277.7 297 52.9
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.0e-72 277.3 303 50.2
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 1.0e-72 277.3 303 50.2
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 1.0e-72 277.3 287 55.4
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.0e-72 277.3 300 52.0
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 1.4e-72 276.9 299 53.2
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 2.3e-72 276.2 296 53.0
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 3.0e-72 275.8 286 53.8
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 5.1e-72 275.0 303 50.2
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 5.1e-72 275.0 294 53.7
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 5.1e-72 275.0 288 55.2
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 8.8e-72 274.2 295 50.8
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 8.8e-72 274.2 295 51.5
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 1.1e-71 273.9 302 50.0
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.5e-71 273.5 293 52.9
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 1.5e-71 273.5 207 68.6
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 2.0e-71 273.1 296 53.4
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 2.0e-71 273.1 207 68.6
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.7e-71 271.6 300 51.3
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 7.4e-71 271.2 219 61.6
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.3e-70 270.4 303 49.5
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.2e-70 269.6 303 49.5
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 2.2e-70 269.6 303 49.5
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 2.2e-70 269.6 303 49.5
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 2.2e-70 269.6 303 49.5
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 3.7e-70 268.9 294 51.7
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 3.1e-69 265.8 303 48.8
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.1e-69 265.4 303 49.2
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 5.3e-69 265.0 317 49.8
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.2e-68 263.8 218 61.0
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 1.2e-68 263.8 296 51.4
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 1.3e-67 260.4 296 50.7
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 6.5e-67 258.1 219 60.3
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 8.5e-67 257.7 213 63.8
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.4e-66 256.9 293 52.6
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 3.2e-66 255.8 293 52.2
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 2.1e-65 253.1 296 50.7
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 7.9e-65 251.1 217 59.9
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 1.4e-64 250.4 299 50.5
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 2.3e-64 249.6 296 48.3
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 2.3e-64 249.6 274 53.3
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 3.9e-64 248.8 289 48.8
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 6.7e-64 248.1 255 53.7
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 4.8e-62 241.9 295 48.1
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 1.4e-61 240.4 292 46.2
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 3.5e-60 235.7 291 47.4
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.0e-59 234.2 270 48.5
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 2.2e-59 233.0 288 47.2
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 2.6e-55 219.5 292 44.5
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 1.4e-53 213.8 313 44.4
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 2.8e-46 189.5 299 41.5
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 8.5e-43 177.9 276 42.0
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.5e-42 177.2 273 42.1
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 4.0e-40 169.1 212 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 8.3e-38 161.4 207 44.4
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.4e-37 159.8 210 43.3
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 1.3e-35 154.1 208 43.3
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 1.0e-32 144.4 162 51.9
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 2.6e-31 139.8 99 66.7
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 2.9e-30 136.3 109 61.5
Lsat_1_v5_gn_6_89500 Lactuca sativa HOM05D002034 ORTHO05D004251 1.4e-29 134.0 141 53.2
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.4e-29 133.3 75 89.3
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 3.5e-28 129.4 206 40.8
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 3.5e-28 129.4 206 40.8
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 6.6e-27 125.2 152 48.7
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 1.1e-26 124.4 93 66.7
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 1.6e-25 120.6 273 32.6
VMungo0647G0969 Vigna mungo HOM05D002034 ORTHO05D004251 1.0e-19 101.3 93 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1890 Anthoceros agrestis HOM05D002034 ORTHO05D004251 6.6e-11 72.0 55 52.7
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.5e-10 70.1 156 34.0
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 5.6e-10 68.9 191 28.3
arahy.Tifrunner.gnm1.ann1.A2LLI3 Arachis hypogaea HOM05D000315 ORTHO05D004251 3.1e-08 63.2 44 77.3
arahy.Tifrunner.gnm1.ann1.I9ZGDX Arachis hypogaea HOM05D000315 ORTHO05D000527 8.9e-08 61.6 35 88.6
Actinidia39683 Actinidia chinensis HOM05D002034 ORTHO05D004251 2.0e-07 60.5 44 72.7
VMungo0251G1570 Vigna mungo HOM05D002681 ORTHO05D004251 7.6e-07 58.5 37 83.8


User provided reference genes

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