Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1594.7 829 100.0
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1167.5 834 76.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 4.0e-311 1071.2 837 68.1
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 8.9e-308 1060.1 829 67.4
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 2.6e-307 1058.5 836 67.1
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 9.9e-299 1030.0 833 65.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.7e-298 1029.2 833 65.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 4.9e-298 1027.7 829 65.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 6.4e-298 1027.3 842 65.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 7.1e-297 1023.8 835 65.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 3.5e-296 1021.5 832 65.0
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 4.6e-296 1021.1 846 65.0
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.3e-295 1018.8 833 65.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 8.7e-295 1016.9 834 66.5
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.1e-294 1016.5 835 66.1
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 3.3e-294 1015.0 828 65.6
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 9.6e-294 1013.4 839 64.1
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.6e-293 1012.7 834 64.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.2e-291 1006.5 832 64.5
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 3.4e-291 1005.0 831 65.0
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.8e-290 1001.5 835 63.7
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.9e-290 1001.1 836 62.7
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.2e-288 996.5 832 63.8
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.0e-287 993.4 835 64.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.0e-287 993.4 832 63.7
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 2.3e-287 992.3 833 63.6
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 3.0e-287 991.9 845 63.2
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.0e-287 991.9 834 63.8
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 3.9e-287 991.5 834 63.3
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 5.1e-287 991.1 836 64.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 6.7e-287 990.7 847 64.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 8.7e-287 990.3 842 63.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 1.9e-286 989.2 835 63.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 4.3e-286 988.0 829 63.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.1e-284 983.4 830 63.9
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.4e-284 983.0 833 63.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 4.0e-284 981.5 852 63.3
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 5.3e-284 981.1 838 63.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 5.3e-284 981.1 841 62.7
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.2e-283 979.9 832 63.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 3.4e-283 978.4 756 66.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 7.6e-283 977.2 830 64.6
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 7.6e-283 977.2 839 62.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 3.8e-282 974.9 834 62.7
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.9e-282 974.5 836 62.6
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 6.5e-282 974.2 836 62.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.1e-281 973.4 780 64.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.4e-281 973.0 836 61.8
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 1.9e-281 972.6 842 61.9
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 5.5e-281 971.1 847 61.5
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 7.1e-281 970.7 836 62.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.6e-280 968.0 838 62.2
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 4.6e-280 968.0 800 64.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.0e-280 967.6 820 62.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.8e-279 966.1 835 61.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 5.7e-278 961.1 756 66.8
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 3.7e-277 958.4 825 61.5
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.8e-277 958.0 837 62.4
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 3.1e-276 955.3 832 62.1
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 6.9e-276 954.1 834 61.2
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 2.9e-274 948.7 835 59.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.8e-274 948.3 855 60.1
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 8.4e-274 947.2 834 61.4
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 8.4e-274 947.2 818 62.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.4e-273 946.4 832 61.1
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 9.3e-273 943.7 757 63.3
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.6e-272 943.0 855 59.6
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 4.6e-272 941.4 835 60.5
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.6e-272 941.4 874 58.9
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.9e-271 938.3 839 60.7
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.3e-270 934.9 836 59.7
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.3e-270 934.9 756 63.9
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 9.7e-270 933.7 835 60.1
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.3e-269 933.3 854 59.4
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 2.8e-269 932.2 836 59.4
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 3.7e-269 931.8 836 60.4
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 3.7e-269 931.8 833 60.9
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 6.3e-269 931.0 836 60.0
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.4e-268 929.9 838 59.3
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 4.1e-268 928.3 835 59.2
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 5.3e-268 927.9 833 59.2
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 6.9e-268 927.5 824 59.3
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 9.0e-268 927.2 824 59.3
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.2e-267 926.8 835 59.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 2.6e-267 925.6 757 63.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 3.4e-267 925.2 900 57.6
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 4.5e-267 924.9 835 58.6
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.0e-266 923.7 841 60.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.8e-266 921.8 831 59.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 5.5e-265 917.9 831 59.6
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.2e-264 916.8 748 62.4
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.8e-261 905.6 818 59.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 4.1e-260 901.7 755 61.9
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 5.3e-260 901.4 880 56.0
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.6e-259 899.0 869 57.3
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.4e-259 898.7 744 66.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 7.7e-259 897.5 825 59.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 7.2e-257 891.0 885 55.6
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.6e-256 889.8 855 57.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 7.9e-256 887.5 818 57.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 5.7e-254 881.3 872 55.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.2e-251 873.6 758 59.2
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 5.2e-247 858.2 841 55.9
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.1e-244 850.5 665 65.1
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 2.4e-244 849.4 837 55.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 8.8e-231 804.3 634 66.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.1e-228 797.3 606 68.0
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 4.1e-228 795.4 598 68.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 4.3e-225 785.4 598 69.7
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.0e-223 780.8 624 67.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.4e-220 769.6 630 66.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 6.6e-218 761.5 755 54.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.9e-217 760.0 749 52.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.4e-215 753.8 805 48.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.1e-215 752.7 598 65.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.5e-214 750.4 770 52.1
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.2e-212 742.7 756 52.9
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.4e-199 700.7 629 61.2
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-194 684.1 542 67.0
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.0e-190 670.2 563 59.5
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.3e-181 641.0 764 44.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-179 634.4 597 58.0
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-138 496.9 561 52.2
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 9.4e-132 475.3 498 47.6
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.6e-126 458.0 465 52.3
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 7.7e-118 429.1 751 35.2
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 8.0e-115 419.1 319 67.4
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 9.2e-111 405.6 403 53.3
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.0e-106 390.6 371 56.3
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.7e-104 384.8 715 32.2
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.3e-98 364.4 276 67.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 9.8e-97 359.0 769 30.9
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 8.3e-96 355.9 289 64.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.9e-95 354.8 298 62.8
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 2.0e-94 351.3 572 43.5
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.5e-92 345.1 401 54.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.9e-92 344.7 400 46.0
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 4.0e-90 337.0 276 64.1
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-88 332.0 265 64.2
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.4e-81 307.4 561 38.0
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 3.8e-80 303.9 424 41.5
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 6.2e-75 286.6 459 42.0
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.2e-71 274.2 427 44.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 7.8e-70 269.6 222 61.7
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.1e-67 261.5 241 56.0
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.9e-66 256.5 590 34.2
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 4.3e-60 237.3 317 44.5
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-59 235.7 407 38.3
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 2.8e-59 234.6 219 52.5
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-57 228.8 268 50.7
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 2.6e-49 201.4 205 58.5
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.3e-44 184.1 133 67.7
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 4.3e-44 184.1 159 64.8
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.3e-43 182.6 409 35.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 9.0e-42 176.4 400 34.5
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.4e-37 162.5 178 56.7
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 8.8e-37 159.8 124 65.3
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.7e-35 154.5 99 72.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.9e-32 144.8 145 54.5
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.3e-29 135.2 92 70.7
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.1e-28 132.9 195 44.1
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.2e-25 122.9 94 63.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 4.5e-25 120.9 233 33.5
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-24 118.6 110 56.4
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 5.0e-24 117.5 140 47.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-23 115.5 74 71.6
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-23 115.5 74 71.6
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.7e-22 111.7 121 47.9
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.4e-21 109.4 153 45.1
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 2.3e-21 108.6 168 41.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 7.4e-20 103.6 74 66.2
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.7e-19 101.3 179 40.2
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.8e-18 99.0 180 38.3
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 7.7e-17 93.6 66 68.2
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.7e-14 85.1 102 47.1
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.9e-09 67.4 52 59.6


User provided reference genes

Program Settings