Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 8.0e-100 367.1 184 100.0
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-97 359.0 184 98.4
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 2.5e-61 239.2 181 68.5
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 7.9e-55 217.6 182 61.0
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.5e-53 212.6 182 61.5
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.5e-53 212.6 178 60.7
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 4.3e-53 211.8 182 61.5
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.8e-51 206.5 182 56.6
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.0e-51 205.3 179 58.7
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 9.0e-51 204.1 181 56.9
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.2e-50 203.8 180 55.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.6e-50 202.6 182 56.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.4e-50 202.2 170 60.0
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 3.4e-50 202.2 173 58.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 6.4e-49 198.0 181 54.7
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 6.4e-49 198.0 178 60.1
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 6.4e-49 198.0 173 60.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.9e-48 196.4 182 55.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.4e-48 196.1 176 56.2
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.4e-48 196.1 178 59.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.2e-48 195.7 176 57.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.2e-48 195.7 181 56.9
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.2e-48 195.3 176 57.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.2e-47 193.7 179 55.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 2.7e-47 192.6 178 52.2
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 4.6e-47 191.8 181 55.8
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.0e-47 191.4 178 55.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 7.9e-47 191.0 177 54.8
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.9e-47 191.0 178 52.8
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.9e-46 188.7 179 57.0
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 6.7e-46 188.0 174 56.3
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 8.7e-46 187.6 179 55.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-45 186.8 178 54.5
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.9e-45 186.4 172 58.7
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.3e-45 185.3 172 58.1
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 7.4e-45 184.5 172 58.1
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.4e-45 184.5 172 58.1
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.3e-44 183.7 179 53.1
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.3e-44 183.7 184 54.9
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.6e-44 183.3 176 56.2
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.1e-44 183.0 182 52.7
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 6.2e-44 181.4 175 54.9
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 6.2e-44 181.4 184 49.5
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 6.2e-44 181.4 168 55.4
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.4e-43 180.3 175 54.3
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.4e-43 179.5 176 55.1
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 3.1e-43 179.1 180 52.8
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.9e-43 177.9 180 52.8
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 6.9e-43 177.9 178 50.6
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 6.9e-43 177.9 179 55.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 9.0e-43 177.6 179 55.3
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.2e-42 177.2 177 52.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.6e-42 176.0 178 53.4
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.5e-42 175.3 171 55.0
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.8e-42 174.9 177 52.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 5.8e-42 174.9 182 51.1
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.0e-41 174.1 171 53.8
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.0e-41 174.1 180 51.7
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.3e-41 173.7 170 52.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.7e-41 173.3 180 50.0
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.7e-41 173.3 167 56.9
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.7e-41 173.3 178 48.9
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.9e-41 172.6 165 53.9
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.9e-41 172.6 91 96.7
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 3.8e-41 172.2 165 53.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 4.9e-41 171.8 167 57.5
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 6.5e-41 171.4 167 52.1
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 8.4e-41 171.0 177 51.4
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 8.4e-41 171.0 180 49.4
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-40 170.2 180 48.3
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 3.2e-40 169.1 117 67.5
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.2e-40 169.1 174 49.4
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.2e-40 169.1 166 55.4
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 3.2e-40 169.1 165 53.3
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.2e-40 168.7 180 48.3
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 4.2e-40 168.7 176 50.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 7.1e-40 167.9 177 50.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 9.3e-40 167.5 178 52.2
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.2e-39 167.2 174 48.9
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.6e-39 166.8 169 52.1
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.7e-39 166.0 176 48.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 4.6e-39 165.2 174 52.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.0e-39 164.9 180 48.9
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.3e-38 162.9 167 54.5
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.6e-37 157.5 142 61.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.3e-36 157.1 142 61.3
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 8.2e-36 154.5 182 48.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.1e-35 152.1 127 59.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 7.6e-34 147.9 258 35.3
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.0e-33 147.5 129 55.8
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 3.2e-32 142.5 140 55.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.8e-30 136.7 133 53.4
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.3e-30 136.3 177 46.3
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 6.7e-30 134.8 189 42.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 8.7e-30 134.4 182 42.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 8.7e-30 134.4 148 43.9
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.1e-29 134.0 184 41.3
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.1e-29 134.0 136 55.9
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.5e-29 133.7 172 45.3
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.5e-29 133.7 171 43.3
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 3.3e-29 132.5 139 53.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 7.4e-29 131.3 183 44.3
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 7.4e-29 131.3 184 40.2
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.6e-28 130.2 182 41.2
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.6e-28 130.2 176 41.5
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.8e-28 129.4 178 41.6
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.3e-28 128.3 185 39.5
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 8.2e-28 127.9 175 43.4
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.4e-27 127.1 133 49.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 3.1e-27 125.9 171 39.8
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.1e-27 125.9 138 44.9
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-27 125.6 141 41.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 6.9e-27 124.8 184 40.2
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.9e-27 124.8 182 42.3
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-26 123.2 182 41.2
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.6e-26 122.9 168 42.3
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.4e-26 122.5 168 41.1
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 7.7e-26 121.3 173 41.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.0e-25 120.9 179 39.7
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.9e-25 119.4 182 39.6
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.8e-25 119.0 171 41.5
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 5.0e-25 118.6 157 41.4
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 5.0e-25 118.6 128 45.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.5e-25 118.2 168 41.1
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.4e-24 117.1 88 65.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.4e-24 117.1 122 51.6
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.5e-24 116.3 180 34.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.5e-24 116.3 180 34.4
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 4.2e-24 115.5 137 46.0
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 5.5e-24 115.2 124 45.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 7.2e-24 114.8 121 47.1
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 9.4e-24 114.4 140 44.3
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.1e-23 113.2 88 64.8
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.6e-23 112.5 158 41.1
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.0e-22 110.9 151 41.1
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 5.1e-22 108.6 130 44.6
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 6.7e-22 108.2 77 67.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-21 107.5 162 38.3
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-21 107.1 158 40.5
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.0e-21 106.7 73 64.4
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.0e-21 106.7 169 37.9
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.3e-21 105.5 80 63.8
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-19 100.9 78 64.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.4e-19 100.5 186 35.5
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.6e-18 96.3 103 54.4
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-17 94.0 138 39.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 5.5e-16 88.6 79 54.4
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.2e-15 87.4 180 32.8
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.2e-15 87.4 158 31.6
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 3.0e-14 82.8 79 54.4
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.4e-11 73.9 94 41.5
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.4e-11 73.9 186 31.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.8e-11 73.6 97 41.2
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.1e-11 72.8 175 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 7.0e-11 71.6 124 33.1
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.0e-10 70.1 98 37.8
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 5.9e-10 68.6 98 37.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.7e-09 67.0 59 54.2
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 5.5e-08 62.0 80 41.2
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 7.2e-08 61.6 97 32.0
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 9.4e-08 61.2 43 62.8
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.4e-08 61.2 43 62.8
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 6.1e-07 58.5 99 36.4
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.0e-06 57.8 39 66.7
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 2.3e-06 56.6 53 54.7
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 5.2e-06 55.5 96 31.2


User provided reference genes

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