Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1844.3 977 100.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1319.7 1021 69.8
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1304.7 1015 69.4
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1302.3 1023 69.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1014 68.9
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1295.8 1030 68.3
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1272.7 1012 67.9
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1269.2 1036 68.2
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1268.1 1017 67.6
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1020 67.3
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1262.3 1023 68.1
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1259.6 1021 66.7
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1259.2 1021 66.7
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1257.7 1022 66.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1256.5 1038 66.5
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1256.1 1016 67.1
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1255.7 1019 65.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1251.9 1018 66.6
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1250.3 1018 66.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1250.0 1025 66.1
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1249.2 1036 65.8
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1246.5 1020 66.7
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1244.2 1032 66.2
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1242.3 1022 66.2
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1242.3 1017 65.5
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1241.5 1018 66.2
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1241.1 1021 66.0
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1240.3 1050 65.2
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1236.9 1024 66.3
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1233.8 1024 65.8
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1232.6 998 67.0
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1231.9 1027 64.4
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1231.1 1015 65.5
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1228.8 1020 66.5
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1228.8 1026 64.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1225.3 1028 65.0
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 1021 66.4
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 1001 66.5
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 1029 64.1
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1221.5 1017 64.9
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1214.9 1027 63.8
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 1022 64.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 1022 64.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1209.5 1022 64.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1207.6 1027 63.7
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1206.8 1023 65.9
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1205.3 1019 65.6
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1035 63.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1015 64.1
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1203.0 1010 64.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1202.6 1022 64.8
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1201.0 1037 65.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1200.3 1014 64.3
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 1015 64.3
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1190.3 947 66.9
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1187.6 1019 63.6
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1187.6 1029 62.7
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1187.2 1059 61.7
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1183.3 1029 62.9
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1182.9 947 66.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1182.5 1022 63.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1181.8 947 66.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1181.4 1030 63.2
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1175.2 1023 61.8
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1172.9 1086 60.5
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1169.5 834 76.1
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1167.9 1050 61.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1167.1 1018 63.2
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1164.4 1002 63.1
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1158.7 1021 62.6
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1157.9 970 64.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1150.2 1009 62.4
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1149.4 1026 60.9
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1147.5 1012 62.2
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1146.7 995 61.9
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1141.3 1041 59.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1140.2 1024 60.4
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1135.9 1023 60.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1135.6 1023 60.1
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1134.8 1023 59.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1134.0 1023 60.1
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1132.1 1023 59.8
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1129.4 1020 60.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1129.4 1023 59.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1129.4 947 64.0
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1128.2 1023 59.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1127.5 1019 60.2
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1126.7 1020 60.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1126.3 1020 60.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1125.2 947 62.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1119.4 1033 59.3
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1115.1 949 62.6
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1114.4 982 62.1
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1113.2 940 62.8
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1112.8 1009 58.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1112.4 948 63.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1107.4 1067 57.8
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1105.1 1001 59.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1100.9 955 61.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1097.8 1069 57.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1082.4 1058 56.9
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.7e-310 1069.3 955 59.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 2.9e-305 1052.0 899 64.1
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 5.1e-302 1041.2 789 70.8
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.5e-301 1038.9 789 70.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 5.3e-291 1004.6 796 68.0
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.3e-289 1000.0 856 62.5
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 7.4e-269 931.0 952 52.7
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 5.5e-264 914.8 976 51.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 9.7e-261 904.0 708 68.2
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.8e-260 902.5 986 48.8
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.2e-255 887.1 950 51.5
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 6.7e-254 881.3 743 66.1
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 4.4e-237 825.5 943 48.0
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.4e-227 793.1 652 65.8
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.2e-224 782.3 621 68.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.8e-222 774.6 627 67.6
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.0e-209 733.0 512 74.4
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.6e-207 727.2 967 42.5
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 6.0e-202 708.8 629 62.8
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.4e-179 633.6 563 58.8
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 4.6e-170 602.8 970 42.8
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 6.0e-170 602.4 685 47.0
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.3e-161 574.7 594 53.7
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.9e-161 573.2 979 39.5
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.6e-138 496.5 599 47.9
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.6e-125 454.9 534 52.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 7.7e-125 452.6 996 31.9
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.2e-122 445.3 406 57.6
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.7e-117 427.6 613 42.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 8.8e-113 412.5 963 29.8
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 9.1e-110 402.5 355 60.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 5.0e-108 396.7 563 49.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.7e-106 390.2 298 67.8
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 6.1e-106 389.8 281 71.9
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 6.8e-105 386.3 271 72.3
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.9e-103 380.2 966 29.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 1.8e-102 378.3 383 58.0
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.7e-100 371.7 398 58.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.9e-100 370.9 406 47.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 6.6e-100 369.8 306 66.0
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 7.0e-94 349.7 575 43.7
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.8e-89 333.2 522 41.8
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.2e-88 332.4 278 66.9
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.4e-86 325.5 268 66.0
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-78 298.9 226 68.6
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.1e-78 296.6 551 37.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.8e-73 280.0 295 54.9
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.4e-72 277.3 301 53.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.3e-68 265.8 190 72.1
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 4.7e-66 257.3 311 46.0
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-65 256.1 238 61.3
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.7e-63 248.8 219 55.3
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-63 247.3 263 53.6
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 2.6e-56 224.9 202 62.4
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 9.3e-54 216.5 225 55.6
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.8e-50 204.1 220 53.6
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.4e-49 202.6 155 69.7
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.5e-48 199.1 134 72.4
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 4.9e-47 194.1 175 56.6
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-46 193.0 175 64.6
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.6e-45 187.6 164 64.6
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 8.4e-39 166.8 389 36.5
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 5.1e-36 157.5 414 34.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 6.9e-33 147.1 297 36.7
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.2e-31 142.1 373 34.6
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 6.3e-26 124.0 92 65.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.3e-25 120.9 74 74.3
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.3e-25 120.9 74 74.3
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.2e-23 115.5 121 48.8
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.9e-23 115.2 74 73.0
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.8e-23 114.8 72 80.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.7e-21 107.8 172 40.7
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.8e-20 105.9 148 50.0
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.7e-19 100.9 108 50.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.9e-15 88.6 139 44.6
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.1e-13 82.4 216 31.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 6.1e-13 80.9 50 76.0
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 4.1e-09 68.2 74 50.0
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 2.0e-08 65.9 53 62.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 5.9e-08 64.3 104 42.3
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 3.8e-07 61.6 126 37.3


User provided reference genes

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