Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.0e-67 260.0 140 100.0
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 9.5e-61 236.9 140 91.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.1e-60 235.7 140 91.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 4.7e-60 234.6 140 89.3
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.2e-60 234.2 140 90.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.1e-60 233.8 140 90.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.1e-60 233.8 140 90.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 90.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 89.3
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 90.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 88.6
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.1e-59 231.9 140 89.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.0e-59 231.5 140 89.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.0e-59 231.5 140 87.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.0e-59 231.5 140 86.4
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.0e-59 231.5 140 87.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 6.8e-59 230.7 140 89.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.9e-59 230.3 140 89.3
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.9e-59 230.3 140 88.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.2e-58 229.9 140 89.3
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.5e-58 229.6 140 88.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.0e-58 229.2 140 86.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.4e-58 228.0 140 89.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.4e-58 228.0 140 87.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 5.8e-58 227.6 141 87.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 7.5e-58 227.3 140 87.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 7.5e-58 227.3 140 87.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-57 226.5 140 87.9
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.7e-57 226.1 140 85.7
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.2e-57 225.7 140 86.4
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.7e-57 224.9 141 86.5
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 6.4e-57 224.2 141 87.2
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.4e-57 224.2 140 87.1
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.4e-57 224.2 140 85.7
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.3e-57 223.8 141 87.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-56 223.4 140 86.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.1e-56 223.4 143 86.0
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.4e-56 223.0 140 86.4
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-56 222.6 140 85.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.4e-56 222.2 140 83.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.2e-56 221.9 143 82.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.1e-56 221.5 140 84.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.4e-56 221.1 140 87.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 7.1e-56 220.7 140 82.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 9.2e-56 220.3 143 83.2
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-55 219.9 139 85.6
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.1e-55 219.2 143 82.5
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.7e-55 218.8 140 83.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 83.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 84.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 84.9
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 142 83.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 81.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.8e-55 217.2 140 82.1
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 7.8e-55 217.2 139 84.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 82.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.7e-54 216.1 140 84.3
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.7e-54 216.1 140 83.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.3e-54 215.7 140 82.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-54 215.7 141 81.6
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.3e-54 215.7 140 84.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.3e-54 215.7 140 82.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.0e-54 215.3 140 82.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 81.4
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 82.1
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 5.1e-54 214.5 139 84.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 6.6e-54 214.2 141 81.6
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 6.6e-54 214.2 147 81.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.6e-54 214.2 139 84.2
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 6.6e-54 214.2 139 84.2
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 8.6e-54 213.8 140 83.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.1e-53 213.4 140 80.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.1e-53 213.4 141 81.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.9e-53 212.6 139 83.5
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 82.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 82.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.5e-53 212.2 164 74.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.5e-53 212.2 140 82.1
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 80.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 80.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.8e-51 206.1 148 77.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-51 206.1 144 76.4
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 80.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 6.8e-51 204.1 163 71.2
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.9e-51 203.8 144 75.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-50 203.4 151 74.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-50 203.4 151 74.8
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 80.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 78.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-50 202.2 149 76.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 3.4e-50 201.8 154 75.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 77.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-49 199.9 140 76.4
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.8e-49 198.4 174 66.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.9e-49 198.0 140 77.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 8.4e-49 197.2 140 77.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-48 196.4 141 77.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.2e-48 195.3 152 72.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.1e-48 194.1 155 71.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-48 194.1 155 71.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-47 193.4 146 71.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 7.8e-47 190.7 148 70.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.0e-46 190.3 114 90.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 3.0e-46 188.7 168 63.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 6.6e-46 187.6 114 88.6
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.1e-45 186.8 176 61.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-45 186.8 136 76.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.5e-45 186.4 140 72.1
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-43 179.5 116 83.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-43 179.5 136 73.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.2e-43 177.9 138 71.7
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.6e-42 175.6 138 68.1
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 7.1e-40 167.5 141 63.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 7.1e-40 167.5 114 79.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.1e-39 166.0 117 78.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.1e-39 166.0 119 77.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.3e-38 162.5 168 55.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-37 160.2 127 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.5e-37 159.1 140 62.9
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 4.3e-37 158.3 114 77.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-35 153.3 136 66.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 4.0e-35 151.8 97 82.5
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-34 150.2 136 66.9
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 5.8e-34 147.9 131 65.6
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 3.8e-33 145.2 168 54.8
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.4e-32 143.3 139 63.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.4e-32 142.5 138 56.5
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 5.4e-32 141.4 110 72.7
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.8e-30 136.3 155 54.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.1e-29 133.7 81 91.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.3e-29 132.1 120 63.3
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.2e-28 127.9 80 87.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.2e-28 127.9 80 87.5
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 8.1e-28 127.5 137 55.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.1e-28 127.5 80 87.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 3.1e-27 125.6 86 80.2
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-27 125.2 116 64.7
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.3e-27 124.8 77 89.6
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-26 123.6 76 90.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-26 123.2 138 54.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.0e-26 122.9 86 79.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.2e-24 115.5 133 53.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.1e-24 114.4 69 85.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.6e-23 113.2 69 88.4
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.6e-21 104.8 71 76.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.8e-20 101.7 104 60.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.2e-20 101.3 59 86.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.7e-17 93.2 71 70.4
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 8.4e-17 90.9 77 63.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.2e-16 89.0 69 72.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.1e-15 86.3 57 82.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 3.7e-12 75.5 72 59.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 3.7e-12 75.5 72 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 8.2e-12 74.3 132 37.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 5.3e-11 71.6 47 80.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-08 62.8 49 65.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 51 62.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 5.5e-08 61.6 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 7.9e-07 57.8 110 41.8
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 7.9e-07 57.8 110 41.8
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-06 56.2 37 70.3
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 2.3e-06 56.2 37 70.3


User provided reference genes

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