Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1228T73 Lonicera japonica HOM05D007084 ORTHO05D008776 1.7e-94 349.4 179 100.0
Hma1.2p1_0091F.1_g046270 Hydrangea macrophylla HOM05D007084 ORTHO05D008776 2.5e-82 308.9 174 87.4
CSS0017809 Camellia sinensis var. sinensis HOM05D007084 ORTHO05D008776 7.3e-82 307.4 177 84.2
GSVIVG01012658001 Vitis vinifera HOM05D007084 ORTHO05D008776 3.6e-81 305.1 173 85.5
Sc17g0007240 Simmondsia chinensis HOM05D007084 ORTHO05D008776 2.6e-79 298.9 174 82.8
Actinidia05525 Actinidia chinensis HOM05D007084 ORTHO05D008776 4.4e-79 298.1 177 81.9
Dinv20035 Davidia involucrata HOM05D007084 ORTHO05D008776 1.9e-77 292.7 179 81.0
vmacro15815 Vaccinium macrocarpon HOM05D007084 ORTHO05D008776 1.9e-77 292.7 172 82.6
TAR624G0375 Trochodendron aralioides HOM05D007084 ORTHO05D008776 3.2e-77 292.0 176 81.2
Haze_06776 Corylus avellana HOM05D007084 ORTHO05D008776 1.3e-75 286.6 176 83.0
AUR62012678 Chenopodium quinoa HOM05D007084 ORTHO05D008776 1.7e-75 286.2 175 77.7
Cc09_g01900 Coffea canephora HOM05D007084 ORTHO05D008776 5.1e-75 284.6 176 80.1
Cfa000247 Carpinus fangiana HOM05D007084 ORTHO05D008776 8.7e-75 283.9 176 82.4
FvH4_3g02430 Fragaria vesca HOM05D007084 ORTHO05D008776 1.5e-74 283.1 176 81.2
Nitab4.5_0002155g0080 Nicotiana tabacum HOM05D007084 ORTHO05D008776 3.3e-74 282.0 173 80.3
Rhsim02G0110300 Rhododendron simsii HOM05D007084 ORTHO05D008776 5.6e-74 281.2 174 79.9
AUR62021978 Chenopodium quinoa HOM05D007084 ORTHO05D008776 9.6e-74 280.4 175 76.6
RcHm_v2.0_Chr5g0003681 Rosa chinensis HOM05D007084 ORTHO05D008776 9.6e-74 280.4 176 81.2
DCAR_028171 Daucus carota HOM05D007084 ORTHO05D008776 1.3e-73 280.0 174 79.9
Sopen10g001280 Solanum pennellii HOM05D007084 ORTHO05D008776 3.6e-73 278.5 169 80.5
PGSC0003DMG400011258 Solanum tuberosum HOM05D007084 ORTHO05D008776 3.6e-73 278.5 170 80.0
CANSAT56G0381 Cannabis sativa HOM05D007084 ORTHO05D008776 2.4e-72 275.8 173 79.2
Nitab4.5_0007448g0030 Nicotiana tabacum HOM05D007084 ORTHO05D008776 2.4e-72 275.8 171 79.5
SGA_v2.0_scaffold7G03869 Striga asiatica HOM05D007084 ORTHO05D008776 3.1e-72 275.4 177 78.5
BcaB01g01841 Brassica carinata HOM05D007084 ORTHO05D008776 5.3e-72 274.6 176 75.6
CAN.G105.15 Capsicum annuum HOM05D007084 ORTHO05D008776 9.0e-72 273.9 171 78.4
Nn1g07109 Nelumbo nucifera HOM05D007084 ORTHO05D008776 9.0e-72 273.9 176 76.1
Prupe.4G023700 Prunus persica HOM05D007084 ORTHO05D008776 1.2e-71 273.5 177 76.3
MD05G1343100 Malus domestica HOM05D007084 ORTHO05D008776 1.5e-71 273.1 175 78.3
Thecc.06G217700 Theobroma cacao HOM05D007084 ORTHO05D008776 3.4e-71 271.9 172 79.1
BolC9t56141H Brassica oleracea HOM05D007084 ORTHO05D008776 4.5e-71 271.6 176 74.4
Carub.0006s3278 Capsella rubella HOM05D007084 ORTHO05D008776 4.5e-71 271.6 176 75.6
ECA248G3788 Erigeron canadensis HOM05D007084 ORTHO05D008776 4.5e-71 271.6 177 77.4
AL6G48360 Arabidopsis lyrata HOM05D007084 ORTHO05D008776 7.6e-71 270.8 176 75.0
BcaC04g21332 Brassica carinata HOM05D007084 ORTHO05D008776 7.6e-71 270.8 176 74.4
C09p33070 Brassica napus HOM05D007084 ORTHO05D008776 7.6e-71 270.8 176 74.4
BraA09t38173Z Brassica rapa HOM05D007084 ORTHO05D008776 7.6e-71 270.8 176 74.4
A09p26060 Brassica napus HOM05D007084 ORTHO05D008776 9.9e-71 270.4 176 74.4
Thhalv10028782m.g Eutrema salsugineum HOM05D007084 ORTHO05D008776 9.9e-71 270.4 176 75.0
AT4G04870 Arabidopsis thaliana HOM05D007084 ORTHO05D008776 1.3e-70 270.0 176 75.0
Gorai.010G179400 Gossypium raimondii HOM05D007084 ORTHO05D008776 1.3e-70 270.0 172 78.5
COL.COLO4_31746 Corchorus olitorius HOM05D007084 ORTHO05D008776 1.7e-70 269.6 172 79.7
Gohir.A06G147600 Gossypium hirsutum HOM05D007084 ORTHO05D008776 1.7e-70 269.6 172 79.1
CARHR252700 Cardamine hirsuta HOM05D007084 ORTHO05D008776 2.9e-70 268.9 176 75.0
VMungo1215G0304 Vigna mungo HOM05D007084 ORTHO05D008776 3.8e-70 268.5 170 79.4
Sp6g04110 Schrenkiella parvula HOM05D007084 ORTHO05D008776 4.9e-70 268.1 176 74.4
Aa31LG9G9630 Aethionema arabicum HOM05D007084 ORTHO05D008776 8.4e-70 267.3 176 74.4
HanXRQChr01g0004301 Helianthus annuus HOM05D007084 ORTHO05D008776 8.4e-70 267.3 177 75.1
QL05p074023 Quercus lobata HOM05D007084 ORTHO05D008776 1.1e-69 266.9 176 76.1
THA.LOC104812962 Tarenaya hassleriana HOM05D007084 ORTHO05D008776 1.1e-69 266.9 176 73.9
Psat1g181960 Pisum sativum HOM05D007084 ORTHO05D008776 1.4e-69 266.5 177 72.9
Solyc10g005290.4 Solanum lycopersicum HOM05D007084 ORTHO05D008776 1.4e-69 266.5 188 72.3
Dinv13874 Davidia involucrata HOM05D007084 ORTHO05D008776 1.9e-69 266.2 225 62.7
MD10G1318100 Malus domestica HOM05D007084 ORTHO05D008776 1.9e-69 266.2 177 76.8
Ciclev10015907m.g Citrus clementina HOM05D007084 ORTHO05D008776 2.4e-69 265.8 173 78.0
TWI38G0963 Tripterygium wilfordii HOM05D007084 ORTHO05D008776 2.4e-69 265.8 176 75.6
Manes.17G037300 Manihot esculenta HOM05D007084 ORTHO05D008776 3.2e-69 265.4 173 76.3
TPR.G7634 Trifolium pratense HOM05D007084 ORTHO05D008776 5.4e-69 264.6 171 76.6
Lj6g0011030 Lotus japonicus HOM05D007084 ORTHO05D008776 7.1e-69 264.2 174 75.3
Lsat_1_v5_gn_1_124280 Lactuca sativa HOM05D007084 ORTHO05D008776 1.2e-68 263.5 172 76.7
Medtr2g022840 Medicago truncatula HOM05D007084 ORTHO05D008776 1.6e-68 263.1 171 76.0
Migut.M01299 Erythranthe guttata HOM05D007084 ORTHO05D008776 2.7e-68 262.3 171 76.6
Aqoxy2G01542 Aquilegia oxysepala HOM05D007084 ORTHO05D008776 3.5e-68 261.9 173 74.6
Duzib160G0109 Durio zibethinus HOM05D007084 ORTHO05D008776 4.6e-68 261.5 172 76.2
Os01g0789100 Oryza sativa ssp. japonica HOM05D007084 ORTHO05D008776 6.0e-68 261.2 168 75.6
Phvul.003G077300 Phaseolus vulgaris HOM05D007084 ORTHO05D008776 6.0e-68 261.2 170 77.1
arahy.Tifrunner.gnm1.ann1.JJP1G0 Arachis hypogaea HOM05D007084 ORTHO05D008776 7.9e-68 260.8 177 74.6
Eucgr.D01306 Eucalyptus grandis HOM05D007084 ORTHO05D008776 1.3e-67 260.0 170 78.2
arahy.Tifrunner.gnm1.ann1.YK9IP3 Arachis hypogaea HOM05D007084 ORTHO05D008776 1.8e-67 259.6 177 74.0
Glyma.07G259200 Glycine max HOM05D007084 ORTHO05D008776 1.8e-67 259.6 170 77.1
Potri.004G018300 Populus trichocarpa HOM05D007084 ORTHO05D008776 1.8e-67 259.6 174 74.1
CsaV3_6G049130 Cucumis sativus L. HOM05D007084 ORTHO05D008776 2.3e-67 259.2 173 75.1
ClCG01G022070 Citrullus lanatus HOM05D007084 ORTHO05D008776 6.7e-67 257.7 173 74.6
PSO832G2811 Papaver somniferum HOM05D007084 ORTHO05D008776 1.1e-66 256.9 174 72.4
Lalb_Chr12g0196111 Lupinus albus HOM05D007084 ORTHO05D008776 1.9e-66 256.1 170 74.1
HPP92_017602 Vanilla planifolia HOM05D007084 ORTHO05D008776 3.3e-66 255.4 169 75.7
CDE11G1072 Ceratophyllum demersum HOM05D007084 ORTHO05D008776 4.3e-66 255.0 169 72.2
Sed0006702 Sechium edule HOM05D007084 ORTHO05D008776 7.4e-66 254.2 173 72.8
PSO210G7580 Papaver somniferum HOM05D007084 ORTHO05D008776 1.3e-65 253.4 176 71.6
Atru.chr10.2184 Acer truncatum HOM05D007084 ORTHO05D008776 1.4e-64 250.0 158 81.6
Sabra04G0010200 Salix brachista HOM05D007084 ORTHO05D008776 2.6e-63 245.7 173 71.1
Ca_00622_v3 Cicer arietinum L. HOM05D007084 ORTHO05D008776 1.3e-62 243.4 171 72.5
Peaxi162Scf00203g00128 Petunia axillaris HOM05D007084 ORTHO05D008776 1.7e-62 243.0 149 79.2
EL10Ac8g20023 Beta vulgaris HOM05D007084 ORTHO05D008776 8.4e-62 240.7 147 78.9
Gohir.D06G153400 Gossypium hirsutum HOM05D007084 ORTHO05D008776 1.1e-61 240.4 172 72.7
Zm00001eb151100 Zea mays HOM05D007084 ORTHO05D008776 5.1e-59 231.5 149 76.5
PSO591G0421 Papaver somniferum HOM05D007084 ORTHO05D008776 1.9e-58 229.6 170 68.2
ATR0752G074 Amborella trichopoda HOM05D007084 ORTHO05D008776 7.6e-55 217.6 150 70.0
SalBow5G2840 Salvia bowleyana HOM05D007084 ORTHO05D008776 5.0e-54 214.9 186 64.0
SalBow5G0122 Salvia bowleyana HOM05D007084 ORTHO05D008776 2.3e-51 206.1 178 63.5
CiPaw.09G089600 Carya illinoinensis HOM05D007084 ORTHO05D008776 8.2e-49 197.6 120 76.7
Mapoly0072s0085 Marchantia polymorpha HOM05D007084 ORTHO05D008776 2.6e-47 192.6 171 58.5
MBI02_g28333_MAGBIO Magnolia biondii HOM05D007084 ORTHO05D008776 3.4e-47 192.2 173 59.5
unitig_748.g7583 Utricularia gibba HOM05D007084 ORTHO05D008776 3.9e-43 178.7 173 56.1
Pp3c12_14310 Physcomitrium patens HOM05D007084 ORTHO05D008776 5.3e-40 168.3 170 53.5
SalBow5G4783 Salvia bowleyana HOM05D007084 ORTHO05D008776 7.4e-34 147.9 107 72.9
CBR_g8026 Chara braunii HOM05D007084 ORTHO05D008776 1.4e-32 143.7 164 49.4
SMO356G0510 Selaginella moellendorffii HOM05D007084 ORTHO05D008776 2.6e-31 139.4 171 49.1
Hund21394 Selenicereus undatus HOM05D007084 ORTHO05D008776 1.5e-29 133.7 84 75.0
Carub.0001s3223 Capsella rubella HOM05D007084 ORTHO05D008776 8.0e-28 127.9 113 59.3
Cre13.g604700 Chlamydomonas reinhardtii HOM05D007084 ORTHO05D008776 3.1e-24 115.9 204 38.7
MELO3C007382.2 Cucumis melo HOM05D007084 ORTHO05D008776 1.2e-20 104.0 64 79.7
FAN18G3368 Fragaria x ananassa HOM05D007084 ORTHO05D008776 2.7e-20 102.8 64 79.7
SEGI_14982 Sequoiadendron giganteum HOM05D007084 ORTHO05D008776 8.0e-20 101.3 71 69.0
MCO12G236 Micromonas commoda HOM05D007084 ORTHO05D008776 1.1e-16 90.9 92 43.5
PRCOL_00002675 Prasinoderma coloniale HOM05D007084 ORTHO05D008776 1.1e-16 90.9 160 41.2
FAN25G0957 Fragaria x ananassa HOM05D007084 ORTHO05D008776 5.5e-13 78.6 47 80.9
Cfa023453 Carpinus fangiana HOM05D007084 ORTHO05D008776 1.2e-12 77.4 172 30.8
FAN21G1856 Fragaria x ananassa HOM05D007084 ORTHO05D008776 8.0e-12 74.7 50 76.0
Sed0024834 Sechium edule HOM05D007084 ORTHO05D008776 1.0e-11 74.3 143 35.7
Mapoly0114s0019 Marchantia polymorpha HOM05D003162 ORTHO05D003599 3.5e-07 59.3 126 30.2
CAN.G3104.1 Capsicum annuum HOM05D003162 ORTHO05D003599 4.5e-07 58.9 117 31.6
Solyc04g049550.3 Solanum lycopersicum HOM05D003162 ORTHO05D003599 4.5e-07 58.9 121 30.6
BcaC02g09718 Brassica carinata HOM05D003162 ORTHO05D003599 5.9e-07 58.5 117 31.6
A04p04870 Brassica napus HOM05D003162 ORTHO05D003599 5.9e-07 58.5 117 31.6
C04p37370 Brassica napus HOM05D003162 ORTHO05D003599 5.9e-07 58.5 117 31.6
BolC4t25301H Brassica oleracea HOM05D003162 ORTHO05D003599 5.9e-07 58.5 117 31.6
BraA04t16200Z Brassica rapa HOM05D003162 ORTHO05D003599 5.9e-07 58.5 117 31.6
Sopen04g019630 Solanum pennellii HOM05D003162 ORTHO05D003599 5.9e-07 58.5 121 30.6
PGSC0003DMG400032550 Solanum tuberosum HOM05D003162 ORTHO05D003599 5.9e-07 58.5 128 31.2
BcaB02g08467 Brassica carinata HOM05D003162 ORTHO05D003599 7.7e-07 58.2 116 30.2
BcaC08g44720 Brassica carinata HOM05D003162 ORTHO05D003599 7.7e-07 58.2 147 28.6
C06p22580 Brassica napus HOM05D003162 ORTHO05D003599 7.7e-07 58.2 147 28.6
BraA04t18448Z Brassica rapa HOM05D000013 ORTHO05D000011 7.7e-07 58.2 143 28.0
Lalb_Chr04g0257071 Lupinus albus HOM05D003162 ORTHO05D003599 7.7e-07 58.2 116 30.2
COL.COLO4_06785 Corchorus olitorius HOM05D003162 ORTHO05D003599 1.0e-06 57.8 154 27.9
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 1.0e-06 57.8 35 77.1
TPR.G15611 Trifolium pratense HOM05D003162 ORTHO05D003599 1.0e-06 57.8 90 30.0
BcaC07g39821 Brassica carinata HOM05D003162 ORTHO05D003599 1.3e-06 57.4 128 30.5
C08p30270 Brassica napus HOM05D003162 ORTHO05D003599 1.3e-06 57.4 128 30.5
BolC8t50634H Brassica oleracea HOM05D003162 ORTHO05D003599 1.3e-06 57.4 128 30.5
BraA09t40259Z Brassica rapa HOM05D003162 ORTHO05D003599 1.3e-06 57.4 128 30.5
Carub.0005s2166 Capsella rubella HOM05D003162 ORTHO05D003599 1.3e-06 57.4 116 29.3
CARHR165050 Cardamine hirsuta HOM05D003162 ORTHO05D003599 1.3e-06 57.4 117 30.8
Thhalv10010682m.g Eutrema salsugineum HOM05D003162 ORTHO05D003599 1.3e-06 57.4 117 30.8
Nitab4.5_0000691g0170 Nicotiana tabacum HOM05D003162 ORTHO05D003599 1.3e-06 57.4 129 30.2
Sp5g07390 Schrenkiella parvula HOM05D003162 ORTHO05D003599 1.3e-06 57.4 117 30.8
AL5G36150 Arabidopsis lyrata HOM05D003162 ORTHO05D003599 1.7e-06 57.0 116 30.2
AT3G55030 Arabidopsis thaliana HOM05D003162 ORTHO05D003599 1.7e-06 57.0 116 30.2
BcaB01g00134 Brassica carinata HOM05D003162 ORTHO05D003599 1.7e-06 57.0 128 31.2
BcaB01g03660 Brassica carinata HOM05D003162 ORTHO05D003599 1.7e-06 57.0 144 28.5
A07p22410 Brassica napus HOM05D003162 ORTHO05D003599 1.7e-06 57.0 116 29.3
BolC3t14994H Brassica oleracea HOM05D003162 ORTHO05D003599 1.7e-06 57.0 144 28.5
BraA07t29917Z Brassica rapa HOM05D003162 ORTHO05D003599 1.7e-06 57.0 116 29.3
Cc09_g02290 Coffea canephora HOM05D003162 ORTHO05D003599 1.7e-06 57.0 128 31.2
Duzib106G1404 Durio zibethinus HOM05D003162 ORTHO05D003599 1.7e-06 57.0 116 28.4
Sopen04g004740 Solanum pennellii HOM05D003162 ORTHO05D003599 1.7e-06 57.0 117 30.8
A07p09830 Brassica napus HOM05D003162 ORTHO05D003599 2.3e-06 56.6 143 28.0
BraA03t11436Z Brassica rapa HOM05D003162 ORTHO05D003599 2.3e-06 56.6 140 28.6
Thhalv10016968m.g Eutrema salsugineum HOM05D003162 ORTHO05D003599 2.3e-06 56.6 151 29.1
Aa31LG5G20270 Aethionema arabicum HOM05D003162 ORTHO05D003599 2.9e-06 56.2 140 28.6
A09p48060 Brassica napus HOM05D003162 ORTHO05D003599 2.9e-06 56.2 128 29.7
CAN.G186.33 Capsicum annuum HOM05D003162 ORTHO05D003599 2.9e-06 56.2 128 29.7
DCAR_027699 Daucus carota HOM05D003162 ORTHO05D003599 3.8e-06 55.8 116 30.2
Eucgr.G02785 Eucalyptus grandis HOM05D003162 ORTHO05D003599 3.8e-06 55.8 161 28.6
Phvul.007G005600 Phaseolus vulgaris HOM05D003162 ORTHO05D003599 3.8e-06 55.8 140 27.9
AT2G39290 Arabidopsis thaliana HOM05D003162 ORTHO05D003599 5.0e-06 55.5 140 29.3
C03p26090 Brassica napus HOM05D003162 ORTHO05D003599 5.0e-06 55.5 141 29.8
CARHR134040 Cardamine hirsuta HOM05D003162 ORTHO05D003599 5.0e-06 55.5 139 27.3
Medtr1g116280 Medicago truncatula HOM05D003162 ORTHO05D003599 5.0e-06 55.5 139 26.6
Peaxi162Scf00072g01015 Petunia axillaris HOM05D003162 ORTHO05D003599 5.0e-06 55.5 117 29.9
Prupe.2G221600 Prunus persica HOM05D003162 ORTHO05D003599 5.0e-06 55.5 116 30.2
Solyc04g009580.3 Solanum lycopersicum HOM05D003162 ORTHO05D003599 5.0e-06 55.5 117 29.9
CBR_g81535 Chara braunii HOM05D003162 ORTHO05D000002 6.6e-06 55.1 135 28.9
Dinv31381 Davidia involucrata HOM05D003162 ORTHO05D003599 6.6e-06 55.1 116 28.4
Gorai.012G092300 Gossypium raimondii HOM05D003162 ORTHO05D003599 6.6e-06 55.1 148 27.7
BcaB06g29073 Brassica carinata HOM05D003162 ORTHO05D003599 8.6e-06 54.7 143 28.0
BcaB06g29075 Brassica carinata HOM05D003162 ORTHO05D003599 8.6e-06 54.7 143 28.0
Carub.0004s2134 Capsella rubella HOM05D003162 ORTHO05D003599 8.6e-06 54.7 140 28.6
Ciclev10031930m.g Citrus clementina HOM05D003162 ORTHO05D003599 8.6e-06 54.7 119 29.4
Dinv25937 Davidia involucrata HOM05D003162 ORTHO05D003599 8.6e-06 54.7 143 26.6
Duzib114G0756 Durio zibethinus HOM05D003162 ORTHO05D003599 8.6e-06 54.7 64 35.9
Nitab4.5_0009249g0010 Nicotiana tabacum HOM05D003162 ORTHO05D003599 8.6e-06 54.7 117 29.1
Thecc.10G064100 Theobroma cacao HOM05D003162 ORTHO05D003599 8.6e-06 54.7 64 35.9
TAR633G0269 Trochodendron aralioides HOM05D003162 ORTHO05D003599 8.6e-06 54.7 143 27.3
Zm00001eb397260 Zea mays HOM05D003162 ORTHO05D003599 8.6e-06 54.7 128 29.7


User provided reference genes

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