Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.8e-176 622.5 307 100.0
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.7e-153 544.7 307 87.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.0e-152 543.5 307 86.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 5.2e-152 541.2 307 85.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 8.8e-152 540.4 307 84.4
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.2e-150 535.8 307 83.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.7e-150 535.0 307 83.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.1e-149 531.9 307 83.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.1e-149 531.9 307 84.7
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.1e-149 531.6 307 84.4
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.1e-149 531.6 307 84.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.1e-149 531.6 307 84.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 4.1e-149 531.6 307 84.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.0e-149 530.8 307 83.7
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.2e-148 530.0 307 83.1
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.6e-148 529.6 307 84.4
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.7e-148 528.9 307 84.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.7e-148 528.9 307 82.4
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.9e-148 527.7 307 83.7
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 7.7e-148 527.3 307 83.1
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.7e-148 527.3 307 83.7
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.0e-147 526.9 307 83.7
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.3e-147 526.6 307 83.4
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.7e-147 526.2 307 84.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.2e-147 525.8 307 83.4
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 6.5e-147 524.2 307 82.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 6.5e-147 524.2 307 83.1
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 8.5e-147 523.9 307 83.7
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 8.5e-147 523.9 307 82.4
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.5e-146 523.1 307 82.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.9e-146 522.7 307 81.4
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.9e-146 522.7 307 82.4
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.9e-146 522.7 307 82.1
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.9e-146 522.7 307 82.4
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.5e-146 522.3 306 83.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.2e-146 521.9 307 82.1
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 4.2e-146 521.5 307 82.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 5.5e-146 521.2 307 82.4
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 5.5e-146 521.2 307 82.1
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 9.4e-146 520.4 307 81.4
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.2e-145 520.0 307 82.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.6e-145 519.6 307 82.7
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.1e-145 519.2 307 82.7
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 2.1e-145 519.2 307 82.1
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.7e-145 518.8 307 82.4
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.7e-145 518.8 307 81.8
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 3.6e-145 518.5 307 81.8
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.1e-145 517.7 307 82.4
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 8.0e-145 517.3 307 82.4
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.0e-144 516.9 307 81.4
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.0e-144 516.9 307 81.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.4e-144 516.5 307 82.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.4e-144 516.5 307 81.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.8e-144 516.2 307 81.8
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.3e-144 515.8 307 80.8
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 3.0e-144 515.4 307 82.1
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.0e-144 515.4 307 81.8
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.2e-144 514.6 307 81.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 6.8e-144 514.2 307 80.8
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 6.8e-144 514.2 307 81.8
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 6.8e-144 514.2 303 83.5
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 8.8e-144 513.8 307 81.4
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.2e-143 513.5 307 81.1
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.5e-143 513.1 307 80.8
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.5e-143 513.1 307 80.8
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.6e-143 512.3 307 80.8
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.6e-143 512.3 328 78.0
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 3.4e-143 511.9 307 81.8
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 4.4e-143 511.5 307 79.8
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.7e-143 511.1 307 79.8
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.2e-142 509.2 307 80.1
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.2e-142 509.2 307 80.5
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 2.2e-142 509.2 307 80.5
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.8e-142 508.8 307 81.1
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-141 506.9 302 81.1
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.4e-141 506.5 304 80.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.4e-141 505.8 307 79.8
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 4.1e-141 505.0 307 79.5
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.0e-139 500.4 303 80.9
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.0e-139 500.4 310 80.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.3e-139 499.2 332 74.7
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.3e-139 499.2 307 77.9
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 8.6e-139 497.3 374 69.3
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 7.3e-138 494.2 305 78.4
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.5e-138 493.8 307 79.2
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.2e-137 493.4 304 78.9
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.0e-136 490.3 309 78.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 2.3e-136 489.2 307 77.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.0e-136 488.8 309 77.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.0e-135 486.1 307 76.2
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 7.5e-135 484.2 305 75.4
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 3.7e-134 481.9 309 75.7
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.7e-134 481.9 309 76.1
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 8.3e-134 480.7 308 76.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 8.3e-134 480.7 308 76.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 8.3e-134 480.7 308 76.0
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.1e-133 480.3 309 76.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.8e-133 479.6 306 76.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.4e-133 479.2 308 76.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 75.9
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 307 74.6
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.6e-132 476.5 309 75.4
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.3e-131 472.6 307 74.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 2.1e-129 466.1 390 62.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 4.7e-129 464.9 305 73.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 6.4e-126 454.5 306 71.2
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 6.4e-126 454.5 306 71.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.2e-125 452.2 306 70.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.4e-125 451.4 307 72.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.0e-124 449.5 306 70.6
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.0e-119 433.0 306 67.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.4e-119 432.2 306 68.3
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.5e-119 431.0 302 68.9
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.1e-116 422.9 306 67.0
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.8e-112 409.8 307 68.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.3e-110 403.7 303 64.4
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 9.2e-109 397.5 237 82.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.0e-107 392.5 263 74.9
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 4.4e-103 378.6 305 61.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-100 370.5 227 79.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.3e-99 366.3 309 59.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.6e-97 359.0 227 79.3
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.3e-86 323.9 211 73.9
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.9e-86 322.0 230 70.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 8.5e-70 268.1 188 72.3
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.2e-65 253.4 145 84.8
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.7e-65 252.7 151 80.1
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 8.2e-65 251.5 183 69.4
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.8e-57 226.5 154 71.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.8e-56 223.8 153 69.3
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 5.9e-55 218.8 302 48.0
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 9.1e-40 168.3 80 95.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 7.7e-39 165.2 83 88.0
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.0e-38 164.9 136 56.6
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.7e-38 164.1 79 91.1
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-38 164.1 89 83.1
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.2e-37 159.8 125 62.4
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 4.2e-37 159.5 80 87.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.6e-36 157.5 299 35.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.4e-35 154.5 207 47.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.3e-35 153.7 308 35.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.8e-28 130.2 114 59.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.8e-25 120.2 82 65.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 9.2e-24 115.2 58 87.9
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.3e-21 106.3 64 78.1
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.1e-20 104.0 60 81.7
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 2.9e-17 93.6 298 29.2
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 6.6e-14 82.4 76 63.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-12 77.8 252 27.4


User provided reference genes

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