Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 1.4e-131 473.0 240 100.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.0e-122 442.6 239 91.2
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.2e-121 439.1 239 90.4
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.7e-121 438.3 237 91.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.7e-121 438.3 237 91.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 6.3e-121 437.6 237 91.1
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 6.3e-121 437.6 239 89.5
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 8.2e-121 437.2 237 91.6
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 8.2e-121 437.2 239 90.8
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.8e-120 436.0 237 91.1
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.4e-120 435.6 237 90.7
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.1e-120 434.9 237 90.3
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.1e-120 434.9 237 90.3
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.3e-120 434.5 237 91.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 5.3e-120 434.5 237 89.5
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 7.0e-120 434.1 239 89.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 7.0e-120 434.1 237 90.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 9.1e-120 433.7 237 90.7
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 9.1e-120 433.7 237 90.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.2e-119 433.3 237 89.9
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.2e-119 433.3 239 89.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.2e-119 433.3 237 89.9
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.2e-119 433.3 237 89.9
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.6e-119 433.0 237 89.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.6e-119 433.0 237 90.7
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.0e-119 432.6 237 89.9
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.0e-119 432.6 237 89.9
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-119 432.2 239 88.7
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.5e-119 431.8 237 89.5
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.5e-119 431.4 237 89.5
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 5.9e-119 431.0 239 89.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 5.9e-119 431.0 237 90.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 5.9e-119 431.0 237 88.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 5.9e-119 431.0 237 89.9
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 7.7e-119 430.6 237 90.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 7.7e-119 430.6 237 90.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 7.7e-119 430.6 237 89.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.0e-118 430.3 237 89.0
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.0e-118 430.3 239 88.7
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.0e-118 430.3 239 88.7
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.3e-118 429.9 237 90.3
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.3e-118 429.9 237 89.0
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.7e-118 429.5 239 88.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.7e-118 429.5 237 89.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.7e-118 429.5 239 88.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.7e-118 429.5 237 88.6
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.7e-118 429.5 239 89.1
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.7e-118 429.5 237 89.5
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.2e-118 429.1 237 89.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.2e-118 429.1 237 89.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.2e-118 429.1 237 88.6
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.2e-118 429.1 237 88.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.2e-118 429.1 237 89.9
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.9e-118 428.7 239 88.7
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 6.5e-118 427.6 237 89.0
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.5e-118 427.6 237 88.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 6.5e-118 427.6 237 88.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 8.5e-118 427.2 237 89.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 8.5e-118 427.2 237 89.0
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.1e-117 426.8 237 89.0
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.9e-117 426.0 237 88.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-117 426.0 240 87.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.2e-117 425.2 237 87.3
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 3.2e-117 425.2 237 88.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.2e-117 425.2 237 88.6
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.2e-117 425.2 261 82.4
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 4.2e-117 424.9 237 88.2
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 5.5e-117 424.5 237 87.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.2e-116 423.3 239 87.4
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.2e-116 423.3 254 83.5
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.6e-116 422.9 239 87.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.6e-116 422.9 237 86.9
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.6e-116 422.9 237 88.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.6e-116 422.9 237 87.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.7e-116 422.2 239 87.4
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.6e-116 421.8 239 87.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.6e-116 421.8 239 87.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.6e-116 421.8 237 88.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 4.7e-116 421.4 236 86.4
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.7e-116 421.4 239 87.9
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.7e-116 421.4 239 86.2
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.7e-116 421.4 239 86.2
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 4.7e-116 421.4 237 88.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 4.7e-116 421.4 239 86.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 8.0e-116 420.6 237 88.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.0e-115 420.2 237 87.3
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.4e-115 419.9 236 86.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.4e-115 419.9 237 86.5
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.4e-115 419.9 239 87.4
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.4e-115 419.9 237 87.8
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.8e-115 419.5 239 85.8
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-115 419.1 237 86.5
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-115 419.1 237 86.5
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.3e-115 419.1 237 86.5
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.3e-115 419.1 237 86.5
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 3.0e-115 418.7 236 85.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 3.0e-115 418.7 236 85.6
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 3.0e-115 418.7 236 85.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 3.0e-115 418.7 236 85.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 4.0e-115 418.3 239 86.2
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.2e-115 417.9 253 83.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 6.7e-115 417.5 237 87.3
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.2e-114 416.8 237 87.3
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.3e-114 415.2 234 86.3
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.7e-114 414.5 238 87.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 9.7e-114 413.7 239 86.2
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 9.7e-114 413.7 237 86.5
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.3e-113 413.3 261 80.5
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.3e-113 411.0 237 83.5
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.1e-112 410.2 239 84.1
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 4.1e-112 408.3 223 90.1
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 5.3e-112 407.9 236 86.0
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.7e-110 402.9 237 82.7
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.7e-110 402.9 236 83.1
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 8.5e-110 400.6 271 77.1
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.6e-108 396.4 237 79.7
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 2.2e-105 386.0 237 81.9
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.8e-104 382.9 237 76.8
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.4e-104 381.3 237 76.8
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 9.1e-104 380.6 237 75.5
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 2.9e-102 375.6 237 78.5
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.3e-97 360.1 238 76.1
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.6e-92 343.2 486 45.1
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 4.4e-90 335.1 237 67.1
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 8.3e-89 330.9 184 90.2
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.6e-84 316.6 231 73.2
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.6e-84 316.6 315 58.1
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.5e-69 266.2 223 65.0
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.2e-57 226.5 150 72.0
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 3.2e-56 222.6 131 86.3
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.9e-53 213.4 150 71.3
Dinv07524 Davidia involucrata HOM05D002352 ORTHO05D003724 3.3e-53 212.6 116 88.8
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.4e-51 207.2 135 77.0
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 3.1e-51 206.1 203 56.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.2e-49 199.9 108 90.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.8e-49 199.1 106 93.4
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 5.6e-45 185.3 104 88.5
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 3.4e-42 176.0 219 39.7
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 6.0e-39 165.2 87 93.1
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 3.0e-38 162.9 152 56.6
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 3.9e-38 162.5 113 75.2
Ah.09g235800 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.2e-36 154.8 89 85.4
Actinidia39443 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.0e-33 147.9 81 86.4
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.3e-33 147.5 227 39.6
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 6.0e-31 138.7 107 71.0
Rhsim10G0085900 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.2e-28 130.2 125 56.0
Rhsim10G0093300 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.3e-28 128.6 125 55.2
Hund23686 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.0e-26 123.6 238 39.9
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.1e-24 117.9 230 30.9
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.1e-19 99.8 86 62.8
vmacro01392 Vaccinium macrocarpon HOM05D002352 ORTHO05D034960 6.3e-12 75.5 75 56.0
Lsat_1_v5_gn_8_117380 Lactuca sativa HOM05D002352 ORTHO05D003724 1.5e-10 70.9 52 69.2
Actinidia17661 Actinidia chinensis HOM05D002352 ORTHO05D056703 6.7e-06 55.5 49 63.3


User provided reference genes

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