Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 0.0e+00 1421.8 738 100.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 4.8e-220 768.5 739 59.5
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.4e-219 766.9 728 59.1
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 5.9e-202 708.4 724 56.5
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 5.4e-179 632.1 744 51.5
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 8.6e-177 624.8 747 51.5
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 4.0e-174 615.9 741 50.3
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 9.8e-173 611.3 725 51.6
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 2.8e-172 609.8 737 50.1
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.2e-170 604.4 733 51.2
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.7e-170 603.2 739 49.4
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 7.8e-170 601.7 742 50.1
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 6.6e-169 598.6 733 49.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.1e-168 597.8 677 53.2
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.5e-168 597.4 735 49.1
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.6e-167 594.0 731 49.4
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.7e-162 576.6 735 47.9
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.2e-159 567.8 733 48.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.1e-159 567.0 723 49.7
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.7e-159 565.8 731 49.0
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.4e-158 564.3 737 47.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 1.8e-158 563.9 724 48.1
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.8e-158 563.9 727 48.7
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 2.3e-158 563.5 709 49.2
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 2.3e-158 563.5 730 47.8
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 8.9e-158 561.6 723 47.2
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 8.9e-158 561.6 702 49.0
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 2.0e-157 560.5 743 48.2
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.7e-156 557.4 715 46.2
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.7e-156 557.4 767 46.5
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.7e-156 556.2 745 47.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 4.9e-156 555.8 732 46.9
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.1e-155 554.7 733 48.6
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.6e-154 550.8 733 48.0
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.5e-152 543.5 717 47.7
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.3e-152 543.1 735 47.2
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.3e-152 543.1 714 48.0
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 9.5e-152 541.6 714 47.9
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.2e-151 541.2 742 46.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.1e-151 540.4 738 46.3
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 4.7e-151 539.3 729 46.5
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 8.9e-150 535.0 726 46.4
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 9.9e-149 531.6 693 47.9
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.7e-148 530.8 699 45.9
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 3.7e-148 529.6 726 46.6
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 3.2e-147 526.6 702 45.9
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.3e-145 521.2 726 46.0
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.5e-144 517.7 694 45.4
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 4.3e-144 516.2 748 43.6
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 7.3e-144 515.4 695 47.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 3.6e-143 513.1 742 45.6
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.1e-142 511.5 700 45.6
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.4e-142 511.1 701 48.2
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.0e-142 509.6 694 47.1
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 5.2e-142 509.2 771 44.5
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 5.2e-142 509.2 771 44.5
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.9e-141 505.0 738 43.6
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.3e-140 504.6 697 44.5
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 6.4e-140 502.3 686 44.8
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 2.4e-139 500.4 725 44.8
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.6e-138 497.7 738 42.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 2.7e-138 496.9 708 45.2
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 1.1e-136 491.5 744 44.9
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.9e-136 490.7 739 43.7
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.9e-136 490.7 705 44.4
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 2.5e-136 490.3 673 47.1
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.6e-136 489.2 697 43.3
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.1e-134 485.0 703 42.5
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 3.1e-134 483.4 745 42.6
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 5.2e-134 482.6 724 42.3
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 3.4e-133 479.9 654 47.1
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 3.5e-130 469.9 608 48.2
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 5.8e-125 452.6 822 40.6
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 7.1e-123 445.7 685 42.2
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.0e-100 372.1 305 66.2
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.8e-97 361.3 547 45.0
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 3.7e-95 353.6 785 36.1
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.8e-94 351.3 334 58.7
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.2e-93 348.6 442 47.7
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.0e-89 335.5 242 74.8
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 7.2e-83 312.8 587 38.3
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.7e-82 310.1 542 39.1
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 6.1e-82 309.7 281 58.7
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.6e-80 304.3 268 60.1
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.7e-76 291.6 392 48.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 3.0e-57 227.6 249 49.4
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.7e-55 220.7 253 50.2
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.2e-45 189.1 158 64.6
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.8e-41 175.3 158 62.7
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.5e-32 145.6 321 38.3
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.4e-30 139.0 100 70.0
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 3.1e-25 121.3 192 40.1
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.2e-23 115.2 197 36.5
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 1.6e-18 99.0 83 61.4
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 6.9e-17 93.6 89 50.6
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-09 69.7 84 48.8
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.1e-09 69.7 255 26.7
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 9.3e-06 56.6 158 33.5


User provided reference genes

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