Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.7e-101 372.9 212 100.0
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.3e-85 320.1 212 83.5
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 2.4e-84 315.8 220 78.6
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.5e-81 306.6 212 79.7
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 2.8e-80 302.4 208 78.4
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.1e-80 300.8 212 78.8
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.1e-79 298.9 212 75.9
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 7.6e-78 294.3 212 75.9
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 6.4e-77 291.2 212 75.5
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 5.4e-76 288.1 210 75.2
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.8e-74 283.1 212 73.1
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 2.3e-74 282.7 213 73.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.9e-74 282.0 210 73.8
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 8.7e-74 280.8 212 72.2
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.5e-73 280.0 211 75.4
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 7.4e-73 277.7 213 73.2
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.3e-72 276.9 212 71.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 1.3e-72 276.9 212 74.1
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 3.7e-72 275.4 213 73.7
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.2e-72 274.6 212 70.8
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 8.1e-72 274.2 212 72.2
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 1.1e-71 273.9 201 72.1
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.0e-71 271.9 212 71.7
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 4.0e-71 271.9 212 72.6
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.0e-70 269.6 223 69.5
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 5.8e-70 268.1 215 70.2
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.0e-69 267.3 208 70.7
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.7e-69 266.5 211 68.2
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.1e-68 263.8 214 70.1
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 1.9e-68 263.1 210 69.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.6e-67 260.0 215 68.4
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 2.1e-67 259.6 214 69.6
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 3.0e-66 255.8 217 67.7
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.1e-65 253.8 215 67.0
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 5.7e-65 251.5 169 78.7
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 7.4e-65 251.1 212 67.5
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 9.6e-65 250.8 213 63.4
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 9.6e-65 250.8 214 68.2
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 1.3e-64 250.4 213 66.7
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.6e-64 250.0 224 64.3
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.6e-64 250.0 212 67.5
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 2.1e-64 249.6 213 66.2
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 8.2e-64 247.7 215 66.0
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.1e-63 247.3 169 75.7
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 1.1e-63 247.3 255 62.0
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 3.1e-63 245.7 213 65.7
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 6.9e-63 244.6 210 62.4
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.2e-62 243.8 214 65.9
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 3.4e-62 242.3 213 64.8
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 4.5e-62 241.9 215 65.1
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 4.5e-62 241.9 208 67.3
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 7.6e-62 241.1 212 66.0
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.3e-61 240.4 226 60.6
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.3e-61 240.4 212 64.2
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.7e-61 240.0 213 65.7
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 2.2e-61 239.6 213 61.0
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 6.5e-61 238.0 212 67.0
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.1e-60 237.3 213 65.3
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.9e-60 236.5 213 65.3
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 2.5e-60 236.1 174 71.8
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 3.2e-60 235.7 177 68.9
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 4.2e-60 235.3 210 61.0
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 4.2e-60 235.3 194 66.0
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.1e-59 233.0 201 64.2
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 4.6e-59 231.9 213 63.8
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.8e-58 229.9 210 61.0
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.9e-58 228.8 213 59.2
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 1.1e-57 227.3 174 71.3
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.5e-57 226.9 210 60.5
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-57 226.5 217 60.8
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 2.8e-56 222.6 155 79.4
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.8e-56 221.9 212 62.3
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.0e-54 216.5 202 58.9
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.6e-54 216.1 170 70.6
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 4.2e-52 208.8 145 78.6
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 4.2e-52 208.8 213 59.2
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 2.7e-51 206.1 217 59.9
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 2.7e-51 206.1 212 55.7
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 3.0e-50 202.6 213 55.9
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.5e-49 200.3 211 59.2
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 5.7e-49 198.4 202 58.4
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.7e-49 197.6 156 69.9
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.3e-48 197.2 215 57.7
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 8.2e-48 194.5 214 55.1
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 1.4e-47 193.7 207 54.6
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 4.1e-47 192.2 154 66.9
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.6e-46 189.5 161 65.8
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.4e-46 189.1 151 69.5
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 3.4e-46 189.1 151 67.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.7e-45 186.8 156 66.0
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 2.9e-45 186.0 174 56.9
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 5.0e-45 185.3 212 52.4
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 8.5e-45 184.5 216 55.1
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.4e-44 183.7 146 67.1
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.2e-44 182.6 197 52.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.2e-43 180.6 144 67.4
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 5.1e-42 175.3 215 55.3
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 4.4e-41 172.2 212 53.3
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.8e-40 169.5 156 62.8
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 3.1e-39 166.0 208 42.8
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.3e-37 160.6 175 55.4
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 2.5e-36 156.4 156 58.3
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 8.0e-35 151.4 214 50.5
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 2.2e-32 143.3 213 51.6
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.7e-32 142.5 186 52.2
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 3.8e-29 132.5 169 50.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 6.1e-27 125.2 132 57.6
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 6.1e-27 125.2 211 35.1
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 1.1e-23 114.4 202 40.6
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.2e-22 110.9 186 44.1
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.1e-20 104.4 173 38.7
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.5e-20 104.0 148 39.2
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.2e-17 94.4 105 56.2
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.4e-17 92.8 88 61.4
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 2.8e-16 89.7 95 53.7
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.8e-16 89.7 77 66.2
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.8e-15 87.0 167 41.3
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 1.2e-14 84.3 68 67.6
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.7e-14 83.2 167 40.7
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 8.0e-11 71.6 79 54.4
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.8e-10 70.5 65 53.8
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 5.2e-10 68.9 42 85.7
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.8e-10 68.6 144 37.5
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 5.7e-09 65.5 54 64.8
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.7e-08 63.9 98 39.8
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.5e-06 56.2 103 35.0


User provided reference genes

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