Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 3.5e-146 521.5 253 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.2e-139 498.4 252 94.4
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 5.4e-139 497.7 253 93.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 9.2e-139 496.9 252 94.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 9.2e-139 496.9 251 94.8
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 6.0e-138 494.2 253 95.3
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 7.8e-138 493.8 253 94.1
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 3.0e-137 491.9 253 94.9
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 5.1e-137 491.1 250 94.0
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.1e-136 490.0 253 91.7
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.9e-136 489.2 251 92.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.9e-136 489.2 253 92.5
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.5e-136 488.8 253 92.5
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 4.3e-136 488.0 252 92.1
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 4.3e-136 488.0 250 93.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 7.3e-136 487.3 252 92.9
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.3e-136 487.3 253 92.1
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 7.3e-136 487.3 253 93.3
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.8e-135 485.3 249 92.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.6e-135 485.0 251 92.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.6e-135 485.0 253 91.3
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 4.7e-135 484.6 253 92.1
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 6.2e-135 484.2 253 92.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 6.2e-135 484.2 253 91.3
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 6.2e-135 484.2 253 92.9
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 6.2e-135 484.2 253 91.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 8.1e-135 483.8 253 92.5
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.1e-135 483.8 253 92.5
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.1e-135 483.8 253 92.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 8.1e-135 483.8 261 90.4
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.4e-134 483.0 248 92.7
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.8e-134 482.6 242 95.9
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.3e-134 482.3 249 92.0
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.0e-134 481.5 253 92.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.2e-134 481.1 248 93.5
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 6.8e-134 480.7 249 92.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 6.8e-134 480.7 250 92.8
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 6.8e-134 480.7 252 91.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 8.9e-134 480.3 250 92.0
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.2e-133 479.9 250 91.2
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.2e-133 479.9 248 93.1
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.2e-133 479.9 249 91.6
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.5e-133 479.6 249 91.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.5e-133 479.6 249 91.2
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.5e-133 479.6 249 91.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 1.5e-133 479.6 251 92.0
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.5e-133 479.6 251 90.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.5e-133 479.6 249 92.8
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.0e-133 479.2 250 91.2
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 2.0e-133 479.2 250 91.2
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.6e-133 478.8 251 90.8
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.6e-133 478.8 251 90.8
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.4e-133 478.4 249 90.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 4.4e-133 478.0 250 92.4
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 5.8e-133 477.6 249 91.6
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 5.8e-133 477.6 249 91.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 5.8e-133 477.6 249 90.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 7.6e-133 477.2 249 91.2
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 9.9e-133 476.9 250 91.2
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 9.9e-133 476.9 249 92.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.3e-132 476.5 253 91.3
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.3e-132 476.5 249 90.8
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.3e-132 476.5 249 91.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.3e-132 476.5 251 90.0
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.7e-132 476.1 249 90.8
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.7e-132 476.1 249 90.4
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.2e-132 475.7 249 91.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 3.8e-132 474.9 249 89.6
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.9e-132 474.6 249 91.2
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 4.9e-132 474.6 271 86.3
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.4e-132 474.2 247 92.3
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 8.4e-132 473.8 253 88.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.1e-131 473.4 244 93.9
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-131 473.4 245 93.1
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.4e-131 473.0 247 91.9
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.9e-131 472.6 246 92.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.4e-131 472.2 247 91.9
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 4.1e-131 471.5 249 90.4
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 5.4e-131 471.1 250 89.6
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 5.4e-131 471.1 248 90.3
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 7.1e-131 470.7 253 88.9
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 7.1e-131 470.7 249 90.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.7e-130 468.8 249 90.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 4.6e-130 468.0 247 90.3
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 1.3e-129 466.5 249 89.2
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.7e-129 466.1 251 88.8
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 9.6e-128 460.3 250 88.8
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.1e-126 455.3 249 86.3
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.4e-125 451.4 247 89.1
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.9e-123 446.0 248 86.3
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 4.6e-122 441.4 264 83.3
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.3e-121 439.1 350 66.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 5.6e-120 434.5 249 85.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 6.2e-119 431.0 246 83.7
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 6.2e-119 431.0 228 91.2
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.4e-118 429.1 223 92.4
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.5e-117 426.4 250 83.6
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.5e-117 426.4 247 82.2
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.2e-114 416.8 242 82.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 3.1e-110 402.1 246 77.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 4.9e-108 394.8 218 88.1
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.8e-100 368.6 191 94.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.8e-97 359.8 190 92.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 4.8e-95 351.7 245 69.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.3e-89 332.8 171 94.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 2.3e-89 332.8 171 94.2
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 3.7e-87 325.5 181 89.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 8.2e-87 324.3 168 94.0
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.5e-84 314.3 162 92.6
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.6e-82 310.1 183 84.2
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 2.0e-77 293.1 185 76.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-75 287.0 164 86.6
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-74 283.5 164 84.1
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.7e-74 282.0 164 85.4
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.1e-72 277.3 145 93.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.8e-71 271.9 147 90.5
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.4e-70 269.6 155 86.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-69 267.3 175 77.1
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.0e-69 266.5 155 85.8
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.7e-69 264.6 213 66.7
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.8e-68 262.3 156 83.3
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.2e-67 259.2 142 88.0
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 8.2e-63 244.6 158 78.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.4e-54 216.5 141 78.0
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.0e-52 211.1 190 55.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.8e-52 209.1 151 72.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.0e-41 174.5 167 58.7
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-40 170.6 93 87.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 7.5e-32 141.7 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 6.6e-28 128.6 129 55.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.6e-26 124.0 58 91.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.6e-26 124.0 71 84.5
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 7.5e-24 115.2 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.5e-19 100.1 60 76.7
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 7.3e-19 98.6 60 75.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.4e-16 89.4 46 84.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.3e-15 87.8 50 78.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 6.4e-07 58.9 89 41.6
Sed0013878 Sechium edule HOM05D030426 ORTHO05D029164 1.9e-06 57.4 29 89.7


User provided reference genes

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