Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 5.2e-173 610.9 299 100.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.1e-110 402.9 297 67.0
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 4.0e-109 398.7 296 67.6
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.3e-107 393.7 296 66.2
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.2e-105 387.1 296 64.5
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.5e-105 385.6 299 61.9
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.0e-99 367.5 298 62.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 3.2e-98 362.5 296 60.5
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 3.2e-98 362.5 296 60.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 5.5e-98 361.7 299 59.2
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.1e-97 359.8 298 58.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 6.0e-97 358.2 298 58.7
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 7.9e-97 357.8 302 58.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.7e-96 354.8 297 61.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-95 354.0 296 58.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.9e-95 353.2 297 61.6
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.3e-94 350.5 300 57.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.3e-94 350.5 296 58.4
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.2e-94 349.7 297 60.9
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.8e-94 349.4 297 58.6
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.8e-94 349.4 297 59.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 3.7e-94 349.0 298 60.4
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.1e-93 347.4 296 57.4
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.8e-93 346.7 296 58.4
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 4.1e-93 345.5 308 58.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 4.1e-93 345.5 297 58.2
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 5.3e-93 345.1 298 58.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 5.3e-93 345.1 297 56.2
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.0e-93 344.4 298 58.4
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.2e-92 344.0 297 57.9
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.2e-92 344.0 297 59.6
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.6e-92 342.8 300 59.3
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.5e-92 342.0 298 57.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.5e-92 342.0 298 57.7
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.7e-92 341.3 299 56.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.0e-91 340.9 295 57.3
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-91 340.5 299 56.5
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.3e-91 340.5 297 57.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.7e-91 340.1 303 58.1
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.5e-91 338.2 299 56.9
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.9e-90 336.7 296 56.4
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 7.2e-90 334.7 297 54.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-89 334.0 292 57.5
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.2e-89 334.0 297 56.2
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.1e-89 333.2 289 58.1
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.1e-89 333.2 280 61.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 6.1e-89 331.6 297 55.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.4e-88 330.5 297 55.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-88 330.5 363 50.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.3e-88 329.7 296 55.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.0e-88 329.3 297 55.2
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.9e-88 328.9 296 54.4
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 5.1e-88 328.6 296 55.7
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 6.7e-88 328.2 296 55.4
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 8.8e-88 327.8 316 53.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.5e-87 327.0 297 54.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.3e-86 323.9 296 54.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.3e-86 323.9 277 60.3
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.7e-86 323.6 301 54.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 3.7e-86 322.4 258 61.6
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.8e-86 322.0 302 54.0
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.4e-85 320.5 317 52.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.4e-85 319.7 295 53.6
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-84 317.4 297 55.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.6e-84 316.2 277 57.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 4.5e-84 315.5 304 52.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 5.9e-84 315.1 297 53.2
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 7.7e-84 314.7 297 52.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 6.5e-83 311.6 296 51.4
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 6.5e-83 311.6 257 58.0
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 8.5e-83 311.2 297 52.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.9e-82 310.1 298 53.4
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.9e-82 310.1 302 52.0
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.2e-82 308.9 319 49.2
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-82 308.9 245 60.8
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-82 308.9 245 60.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.1e-81 306.6 297 51.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.1e-81 306.6 254 58.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.7e-81 306.2 297 50.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 3.6e-81 305.8 297 50.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.6e-81 305.8 274 55.5
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.1e-81 305.1 301 52.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-79 300.8 276 52.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-79 300.4 276 52.9
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.4e-79 298.9 288 53.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.7e-78 297.0 311 54.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 7.0e-77 291.6 299 48.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.5e-76 290.4 299 51.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.3e-75 287.3 238 59.7
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 5.5e-74 282.0 278 50.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.6e-73 279.3 178 72.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 8.0e-73 278.1 257 50.6
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.0e-73 278.1 263 54.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.3e-72 276.6 297 48.1
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.0e-72 276.2 317 48.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 3.0e-72 276.2 298 48.7
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 3.0e-72 276.2 297 47.1
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 3.3e-71 272.7 258 51.9
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.4e-69 266.5 248 53.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.0e-68 263.5 297 46.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.6e-68 263.1 221 59.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 5.5e-66 255.4 252 52.0
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 5.7e-63 245.4 262 49.6
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.7e-62 242.7 182 62.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 8.2e-62 241.5 259 48.6
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-61 241.1 305 45.2
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.3e-59 234.2 224 55.4
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.2e-56 222.2 234 50.9
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.0e-55 220.3 257 46.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.1e-53 213.0 141 67.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 2.3e-48 196.8 209 50.2
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 8.9e-48 194.9 229 44.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.6e-47 193.4 141 63.8
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 3.4e-47 193.0 307 37.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 4.4e-47 192.6 200 49.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 9.8e-47 191.4 265 42.6
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.1e-45 186.4 215 49.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 5.4e-45 185.7 190 44.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.2e-44 184.5 168 52.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 4.5e-44 182.6 188 51.6
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.0e-43 181.4 130 63.8
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.0e-43 181.4 190 52.6
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.3e-43 181.0 205 48.8
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.7e-43 180.6 223 42.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.5e-42 177.6 245 39.6
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.9e-38 163.3 96 80.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 4.9e-38 162.5 112 67.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.9e-37 160.6 96 79.2
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-37 160.2 96 79.2
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.0e-37 158.7 96 77.1
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.5e-36 156.4 169 50.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.5e-34 151.0 236 37.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.3e-34 149.4 170 44.1
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-32 144.8 149 53.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.9e-32 141.7 156 46.8
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.7e-28 130.2 255 31.8
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 4.6e-28 129.4 99 61.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.6e-28 129.4 193 39.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 7.3e-26 122.1 362 28.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 3.6e-25 119.8 76 65.8
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-25 119.8 67 73.1
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.7e-25 119.4 67 76.1
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-24 118.2 278 33.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.8e-24 115.5 67 71.6
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 9.9e-23 111.7 296 26.4
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.3e-22 111.3 138 41.3
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.7e-22 109.8 72 69.4
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.4e-21 107.1 69 71.0
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 6.0e-20 102.4 259 26.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 4.3e-18 96.3 85 51.8
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 9.5e-18 95.1 82 56.1
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.7e-17 92.8 82 57.3
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-16 90.9 83 59.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 5.8e-15 85.9 59 66.1
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 9.2e-13 78.6 91 49.5
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 6.6e-11 72.4 71 52.1
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.5e-10 71.2 61 50.8
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.4e-08 63.9 92 37.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 3.1e-08 63.5 53 58.5
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 4.0e-08 63.2 41 65.9


User provided reference genes

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