Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.2e-119 431.8 221 100.0
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.4e-82 310.1 225 73.8
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.4e-82 310.1 226 71.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.4e-82 309.3 225 73.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.1e-82 308.9 226 71.2
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.8e-80 302.0 225 69.8
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 5.5e-79 298.1 226 70.4
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.3e-77 292.7 221 71.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 5.1e-77 291.6 225 68.9
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 8.8e-77 290.8 242 65.3
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-76 290.0 224 68.8
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.6e-76 289.3 225 67.6
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.7e-76 288.1 212 71.7
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.7e-76 287.3 212 72.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.3e-75 287.0 212 71.2
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 3.7e-75 285.4 217 69.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.7e-75 285.4 221 68.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 6.3e-75 284.6 224 67.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 6.3e-75 284.6 221 69.2
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 8.2e-75 284.3 221 68.3
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.2e-75 284.3 222 69.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.1e-74 283.9 225 65.3
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.1e-74 283.9 222 69.8
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-74 283.5 217 68.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.8e-74 283.1 218 68.3
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.4e-74 282.7 226 68.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 6.9e-74 281.2 217 67.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 9.1e-74 280.8 217 67.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 9.1e-74 280.8 217 67.7
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-73 280.4 226 66.8
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.2e-73 280.4 222 68.0
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.5e-73 280.0 226 66.8
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.5e-73 280.0 222 68.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.0e-73 279.6 222 67.6
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.6e-73 279.3 252 62.3
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.6e-73 279.3 222 68.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.4e-73 278.9 223 66.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.5e-73 278.5 222 66.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 4.5e-73 278.5 217 69.1
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 5.9e-73 278.1 209 69.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.9e-73 278.1 225 67.1
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.0e-72 277.3 217 66.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.0e-72 277.3 222 66.7
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.0e-72 277.3 227 67.4
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.0e-72 277.3 225 67.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.3e-72 276.9 225 67.6
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.3e-72 276.9 211 70.1
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-72 276.9 221 67.9
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-72 276.6 230 67.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 2.2e-72 276.2 222 66.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.2e-72 276.2 222 65.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-72 276.2 226 65.5
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.2e-72 276.2 219 67.6
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.2e-72 276.2 222 67.1
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.9e-72 275.8 217 66.4
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.8e-72 275.4 223 66.8
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 5.0e-72 275.0 217 66.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 8.5e-72 274.2 224 67.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-71 273.9 216 66.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.1e-71 273.9 215 67.9
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.9e-71 273.1 208 68.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.9e-71 273.1 222 65.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.2e-71 272.3 226 64.6
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.2e-71 272.3 224 66.5
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 4.2e-71 271.9 216 66.2
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 5.5e-71 271.6 217 65.9
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 7.2e-71 271.2 222 64.9
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 9.4e-71 270.8 229 63.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-70 270.4 218 64.7
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-70 270.4 223 65.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-70 270.4 223 65.0
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.2e-70 270.4 221 67.9
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.2e-70 270.4 221 66.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.6e-70 270.0 223 64.6
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.1e-70 269.6 213 70.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.1e-70 269.6 218 65.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.1e-70 269.6 231 62.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.1e-70 269.6 225 66.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.7e-70 269.2 224 66.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.6e-70 268.9 222 64.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-70 268.9 222 64.4
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.7e-70 268.5 224 65.2
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 4.7e-70 268.5 226 64.2
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 6.1e-70 268.1 223 65.5
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.9e-70 267.7 215 65.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 7.9e-70 267.7 220 66.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.4e-69 266.9 220 66.8
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.8e-69 266.5 158 83.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.8e-69 266.5 226 65.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 2.3e-69 266.2 227 63.9
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.3e-69 266.2 224 66.1
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-69 266.2 223 65.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.9e-69 265.4 223 65.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 3.9e-69 265.4 247 59.1
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 5.2e-69 265.0 223 64.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 6.7e-69 264.6 223 64.6
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 6.7e-69 264.6 213 64.8
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.1e-68 263.8 228 63.2
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.5e-68 263.5 229 63.8
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-68 263.1 220 65.5
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.3e-68 262.3 217 64.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.4e-68 261.9 205 68.8
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 4.4e-68 261.9 205 69.3
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 9.7e-68 260.8 211 67.3
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.3e-67 260.4 216 63.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.1e-66 257.3 280 54.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-66 257.3 206 68.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-66 257.3 206 68.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.8e-66 256.5 212 64.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.1e-66 255.8 222 63.5
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.0e-65 253.1 224 59.4
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.0e-65 253.1 223 60.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-65 252.3 229 62.0
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.8e-64 248.8 158 77.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 8.5e-64 247.7 241 59.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.9e-63 246.5 158 76.6
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 4.7e-62 241.9 215 60.9
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.6e-60 236.1 223 60.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 4.8e-59 231.9 218 55.0
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 5.3e-58 228.4 215 60.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 7.0e-58 228.0 215 60.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.5e-55 220.3 221 58.4
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 4.2e-55 218.8 203 55.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 9.4e-55 217.6 145 74.5
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.2e-54 217.2 214 58.9
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.6e-54 215.7 127 81.9
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.7e-54 215.3 224 58.0
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-53 213.4 117 86.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.8e-53 213.4 119 84.0
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.0e-53 212.6 203 58.1
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 5.7e-52 208.4 119 84.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-48 197.6 222 53.6
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 6.5e-48 194.9 212 49.5
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.2e-46 190.7 219 47.0
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.2e-46 190.7 126 69.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.6e-46 189.1 228 47.4
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 4.7e-46 188.7 158 54.4
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.0e-44 183.3 104 80.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.1e-42 176.0 215 49.8
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-41 174.1 163 60.7
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 4.5e-41 172.2 251 39.4
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.5e-41 172.2 161 59.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.9e-40 169.5 166 57.8
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 5.6e-39 165.2 165 59.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.1e-38 161.8 227 46.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.0e-33 146.7 146 57.5
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.4e-29 134.0 190 45.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-27 127.5 81 74.1
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.4e-26 124.0 301 34.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.8e-25 118.2 158 45.6
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 7.8e-25 118.2 162 39.5
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.3e-24 117.5 126 55.6
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.9e-24 115.9 75 74.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.5e-23 114.0 70 77.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-20 104.4 67 79.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 7.5e-20 101.7 81 63.0
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.9e-18 97.1 156 39.7
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.4e-18 96.7 59 78.0
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.4e-18 95.5 72 66.7
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-16 90.1 119 52.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.7e-14 82.4 142 38.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.8e-13 80.5 93 57.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 6.8e-13 78.6 165 32.1
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 8.4e-11 71.6 92 50.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.9e-10 70.5 241 32.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.9e-10 70.5 94 48.9
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-07 61.2 52 61.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.6e-07 58.2 33 72.7
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 3.6e-06 56.2 44 70.5
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.7e-06 55.8 100 38.0


User provided reference genes

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