Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.0e-87 326.6 154 100.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 1.6e-72 276.2 153 85.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 2.1e-69 265.8 153 82.4
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.6e-67 258.8 153 78.4
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 2.8e-66 255.4 153 77.1
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.7e-66 255.0 153 78.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 3.7e-66 255.0 153 75.8
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.9e-66 254.6 149 79.2
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 4.1e-65 251.5 153 75.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 7.0e-65 250.8 153 76.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 9.1e-65 250.4 153 75.2
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 9.1e-65 250.4 153 75.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.2e-64 250.0 153 75.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.6e-64 249.6 153 75.8
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.5e-64 248.1 153 75.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.7e-63 246.1 153 74.5
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 1.7e-63 246.1 153 73.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 1.7e-63 246.1 153 73.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 2.3e-63 245.7 153 75.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 2.9e-63 245.4 153 73.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 2.9e-63 245.4 153 73.2
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 3.8e-63 245.0 153 73.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 3.8e-63 245.0 152 74.3
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 5.0e-63 244.6 152 73.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 5.0e-63 244.6 153 73.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 6.6e-63 244.2 153 73.2
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 6.6e-63 244.2 152 73.0
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 6.6e-63 244.2 153 73.2
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 8.6e-63 243.8 153 73.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 8.6e-63 243.8 152 73.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.6e-63 243.8 153 75.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.1e-62 243.4 153 73.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 1.5e-62 243.0 153 73.2
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 1.5e-62 243.0 152 75.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 1.9e-62 242.7 153 71.9
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 1.9e-62 242.7 152 73.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 2.5e-62 242.3 153 71.2
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.5e-62 242.3 152 73.7
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 2.5e-62 242.3 152 75.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 3.3e-62 241.9 152 73.7
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 4.2e-62 241.5 152 72.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 7.2e-62 240.7 152 72.4
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 7.2e-62 240.7 153 71.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.2e-62 240.7 153 70.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.2e-61 240.0 152 72.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.2e-61 240.0 152 71.1
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 1.6e-61 239.6 153 71.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 1.6e-61 239.6 153 68.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 2.1e-61 239.2 153 73.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.8e-61 238.8 152 73.7
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 3.6e-61 238.4 152 73.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 4.7e-61 238.0 152 73.7
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 6.1e-61 237.7 153 70.6
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 8.0e-61 237.3 153 73.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 1.0e-60 236.9 153 70.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.4e-60 236.5 153 71.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 1.8e-60 236.1 150 72.0
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-60 236.1 153 71.2
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 1.8e-60 236.1 152 73.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 2.3e-60 235.7 153 71.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 3.0e-60 235.3 153 70.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 4.0e-60 235.0 153 70.6
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 5.2e-60 234.6 153 70.6
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 6.8e-60 234.2 153 70.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 6.8e-60 234.2 153 70.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.2e-59 233.4 153 69.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.2e-59 233.4 153 69.9
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.5e-59 233.0 152 70.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 1.5e-59 233.0 153 69.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 2.0e-59 232.6 152 71.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.0e-59 232.6 152 71.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 3.4e-59 231.9 153 69.3
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 4.4e-59 231.5 153 70.6
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 9.8e-59 230.3 153 69.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 2.2e-58 229.2 152 70.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 8.3e-58 227.3 182 63.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 1.4e-57 226.5 150 70.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 2.4e-57 225.7 150 70.7
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.4e-57 225.7 150 70.7
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 3.2e-57 225.3 152 67.1
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 4.1e-57 224.9 150 70.0
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 5.4e-57 224.6 152 67.8
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 1.2e-56 223.4 150 69.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 1.3e-55 219.9 184 59.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.3e-55 219.9 152 65.8
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 1.7e-55 219.5 152 65.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 3.9e-55 218.4 152 64.5
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 5.0e-55 218.0 152 65.1
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 5.0e-55 218.0 152 65.1
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 6.6e-55 217.6 152 65.8
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 1.1e-54 216.9 152 65.8
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.1e-54 216.9 152 65.8
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.5e-54 216.5 152 64.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.9e-54 216.1 152 65.1
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 8.0e-53 210.7 152 63.8
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 2.0e-51 206.1 152 62.5
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 2.9e-50 202.2 154 66.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 2.7e-48 195.7 151 60.3
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.7e-47 193.0 153 62.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.1e-45 186.0 152 63.2
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.7e-45 184.9 150 57.3
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-44 183.7 107 81.3
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.8e-44 183.0 153 60.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.1e-44 182.2 152 57.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.5e-43 179.9 105 74.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.3e-42 176.8 150 54.7
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 6.0e-40 167.9 153 50.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.7e-34 148.7 153 47.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 1.3e-26 123.6 70 77.1
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.6e-24 116.7 151 41.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 6.2e-21 104.8 106 50.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 8.1e-21 104.4 64 75.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 9.3e-17 90.9 64 67.2
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 4.6e-16 88.6 97 47.4
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 8.7e-15 84.3 51 72.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.4e-12 77.0 44 72.7
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-10 69.7 84 39.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 3.2e-09 65.9 92 39.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 3.2e-09 65.9 84 36.9
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.5e-09 65.1 39 71.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.3e-07 60.5 101 30.7
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.3e-07 59.7 97 39.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.3e-07 59.7 84 33.3
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 3.9e-07 58.9 44 59.1
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-06 57.4 148 29.7
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.9e-06 56.6 84 32.1
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.9e-06 56.6 152 25.7


User provided reference genes

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