Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1078.2 655 100.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 6.2e-179 631.7 655 64.7
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.1e-164 584.3 634 58.7
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.6e-161 571.6 638 61.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 3.2e-159 566.2 660 58.8
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 4.3e-156 555.8 627 57.9
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.2e-153 547.7 650 58.6
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.7e-152 543.9 640 55.6
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 5.0e-152 542.3 634 61.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 3.2e-151 539.7 646 55.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 6.1e-150 535.4 636 55.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 1.8e-149 533.9 620 56.5
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.8e-149 533.9 662 53.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 3.0e-149 533.1 626 57.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 2.5e-148 530.0 612 56.4
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 3.3e-148 529.6 636 54.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 1.3e-147 527.7 663 53.5
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 1.1e-146 524.6 647 56.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 6.9e-146 521.9 633 55.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 2.6e-145 520.0 633 58.1
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 8.5e-144 515.0 640 53.6
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.4e-143 514.2 625 54.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 2.5e-143 513.5 633 52.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 6.1e-142 508.8 652 55.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 2.3e-141 506.9 629 53.1
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 6.7e-141 505.4 635 58.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.0e-140 503.8 635 53.9
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 2.0e-140 503.8 630 52.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 1.3e-139 501.1 635 57.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 6.3e-139 498.8 630 52.5
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.4e-138 497.7 633 53.1
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.8e-138 497.3 658 52.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 2.4e-138 496.9 641 52.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 3.1e-138 496.5 627 53.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.0e-136 491.5 649 51.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 2.5e-135 486.9 633 61.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 4.2e-135 486.1 637 54.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 4.7e-134 482.6 636 53.1
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 4.7e-134 482.6 641 53.5
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 3.9e-133 479.6 641 54.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 5.1e-133 479.2 656 51.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 6.7e-133 478.8 641 54.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 6.7e-133 478.8 621 56.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 8.8e-133 478.4 635 54.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 3.7e-131 473.0 650 51.2
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.3e-131 472.2 649 51.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 2.0e-129 467.2 634 52.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 4.5e-129 466.1 631 51.5
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 5.9e-129 465.7 635 53.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 5.9e-129 465.7 644 55.4
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 7.7e-129 465.3 630 52.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 3.8e-128 463.0 635 54.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 6.5e-128 462.2 650 50.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 6.1e-126 455.7 640 50.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 1.0e-125 454.9 635 53.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 1.8e-125 454.1 793 45.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 3.0e-125 453.4 637 51.8
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 9.7e-124 448.4 625 51.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.8e-123 446.0 631 51.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 1.9e-119 434.1 615 50.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.5e-119 433.7 632 50.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 9.4e-119 431.8 715 46.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 1.2e-118 431.4 655 50.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.1e-118 430.6 639 49.6
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 2.7e-118 430.3 629 50.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 6.1e-118 429.1 645 49.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 4.0e-117 426.4 638 48.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 2.0e-116 424.1 573 51.7
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 7.5e-116 422.2 639 48.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 9.8e-116 421.8 618 51.8
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 2.8e-115 420.2 618 48.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 4.8e-115 419.5 621 48.1
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.8e-115 419.5 638 52.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 1.4e-114 417.9 653 44.4
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 4.1e-114 416.4 638 48.6
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 1.2e-113 414.8 602 50.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 1.2e-113 414.8 646 47.8
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.2e-113 414.8 606 50.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.7e-112 411.0 585 53.3
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 3.8e-112 409.8 584 50.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 6.5e-112 409.1 641 49.9
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.9e-111 407.5 638 50.2
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 5.5e-111 406.0 639 48.4
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 7.2e-111 405.6 635 48.0
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 7.2e-111 405.6 641 49.5
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.0e-109 401.7 638 49.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.5e-108 397.9 611 52.5
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.4e-106 391.3 600 49.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.3e-104 384.8 620 51.1
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 3.6e-102 376.7 643 42.3
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 4.3e-95 353.2 371 58.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 9.5e-95 352.1 504 50.8
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 5.2e-93 346.3 339 63.7
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.2e-89 335.1 438 51.4
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.0e-88 332.0 659 42.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 3.9e-88 330.1 647 41.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 6.6e-88 329.3 300 67.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.2e-84 318.5 404 51.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.0e-80 305.4 601 41.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 2.3e-80 304.3 612 44.4
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-79 302.0 595 41.5
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.3e-79 300.4 565 50.1
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 4.4e-76 290.0 438 41.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 3.6e-70 270.4 618 36.7
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 9.6e-63 245.7 581 38.9
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.5e-55 221.1 418 41.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 4.9e-51 206.8 197 53.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 4.2e-50 203.8 190 55.8
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.1e-41 174.9 322 33.5
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.5e-39 168.7 95 77.9
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 7.4e-39 166.4 298 49.7
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 2.1e-33 148.3 453 36.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-31 142.5 94 69.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 3.2e-26 124.4 237 42.2
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.2e-26 123.2 63 96.8
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-24 118.2 61 86.9
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 8.8e-24 116.3 298 41.3
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.5e-18 97.1 303 35.6
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.6e-12 78.2 110 49.1
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 5.0e-11 73.9 38 84.2


User provided reference genes

Program Settings