Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2696.4 1382 100.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2300.8 1416 84.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2265.0 1417 82.9
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2174.4 1422 79.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2168.3 1413 79.1
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2167.9 1414 79.3
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2155.6 1415 78.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2155.2 1415 78.6
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2150.2 1418 78.7
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2149.8 1417 78.3
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2148.6 1411 78.9
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2146.7 1415 78.2
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2146.3 1416 78.0
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2144.8 1417 78.7
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2144.8 1406 78.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2142.5 1416 77.8
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2142.1 1416 77.8
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2140.5 1414 78.4
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2137.5 1415 77.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2137.1 1417 77.6
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2135.5 1417 77.6
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2134.8 1413 77.7
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2133.6 1416 77.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2133.6 1416 77.9
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2133.2 1418 77.7
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2132.8 1418 77.8
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2132.5 1417 78.0
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2129.4 1416 77.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2126.7 1411 77.9
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2125.1 1416 77.4
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2125.1 1416 77.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2123.2 1460 75.5
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2119.7 1416 77.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2113.6 1415 76.5
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2113.2 1425 76.8
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2102.4 1411 77.2
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2100.1 1426 75.7
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2098.6 1417 75.7
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2097.4 1414 77.2
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2095.5 1416 76.2
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2083.5 1411 76.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2083.1 1440 75.2
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2078.5 1415 74.9
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2078.5 1450 75.2
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2076.2 1418 75.4
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2068.5 1413 75.1
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2068.1 1485 72.5
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2065.8 1419 74.3
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2063.5 1375 77.9
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2061.2 1420 74.3
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2060.8 1410 75.0
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2058.1 1414 74.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2054.3 1430 75.5
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2052.3 1420 74.7
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2051.2 1509 71.2
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2050.0 1414 74.6
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2048.1 1416 74.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2041.5 1420 74.3
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2036.5 1415 75.8
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2022.3 1414 74.3
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2013.0 1249 82.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2009.2 1410 74.0
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2008.0 1723 64.5
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 1992.6 1434 72.0
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 1991.1 1430 72.1
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 1983.0 1430 71.7
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 1974.5 1444 70.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 1972.6 1425 71.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1969.9 1429 71.4
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 1969.1 1430 71.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 1968.4 1430 71.3
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1966.0 1430 71.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1964.5 1430 71.1
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1959.1 1417 72.3
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1952.2 1309 77.3
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1951.4 1278 79.3
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1946.0 1440 70.8
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1937.5 1396 71.6
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1925.2 1350 73.3
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1921.4 1343 73.5
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1898.2 1348 72.7
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1869.7 1376 72.5
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1852.4 1358 70.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1790.8 1425 66.9
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1773.8 1394 65.5
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1772.7 1217 74.3
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1733.4 1389 64.7
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1697.6 1508 61.7
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1690.2 1408 62.4
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1516.1 933 82.0
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1374.8 1146 61.8
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1357.4 933 76.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1281.2 1405 49.3
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1239.2 846 75.7
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1223.8 1389 47.1
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1218.8 879 68.9
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1218.0 1371 47.3
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1196.8 1415 45.5
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1185.2 794 78.0
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1165.2 818 72.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1158.7 764 77.0
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.1e-310 1070.5 741 76.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.2e-249 864.8 600 75.7
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.5e-238 830.9 613 71.3
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.8e-237 826.6 843 50.9
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 2.9e-210 736.9 511 74.4
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 5.2e-175 619.8 439 74.0
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 8.3e-157 559.3 1515 28.4
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 3.2e-153 547.4 530 56.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 3.8e-146 523.9 574 51.4
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.4e-140 503.4 531 52.0
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.2e-127 460.3 364 64.6
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 2.0e-118 431.8 536 50.0
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 6.2e-104 383.6 227 81.1
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.6e-91 342.4 222 74.8
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.1e-87 328.2 196 80.1
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 2.5e-81 308.5 415 46.5
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.3e-61 243.0 298 48.0
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.6e-54 218.8 132 81.8
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.9e-52 212.6 139 75.5
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.3e-45 189.9 128 68.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 7.7e-38 164.1 135 71.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.1e-36 160.2 116 73.3
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.2e-32 146.0 89 71.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.3e-32 144.4 147 49.0
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 5.4e-31 141.4 117 59.0
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.6e-30 139.8 112 63.4
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 5.9e-30 137.9 83 80.7
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 7.8e-30 137.5 83 74.7
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 5.0e-29 134.8 101 70.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.0e-26 127.1 153 51.6
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.5e-25 123.2 239 38.5
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 1.4e-23 116.7 89 68.5
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 6.6e-21 107.8 121 47.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.1e-20 107.1 85 67.1
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.1e-20 107.1 98 51.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 4.0e-18 98.6 89 53.9
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.4e-17 95.5 53 86.8
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 5.8e-17 94.7 105 50.5
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.7e-16 93.2 94 60.6
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.2e-15 89.0 54 81.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 9.5e-12 77.4 41 92.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.6e-11 75.5 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 5.8e-09 68.2 106 39.6
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 3.7e-08 65.5 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 3.7e-08 65.5 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.7e-08 65.5 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.7e-08 65.5 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 3.7e-08 65.5 44 75.0
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.1e-07 62.0 43 72.1
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.1e-07 62.0 56 53.6
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.1e-07 62.0 56 53.6


User provided reference genes

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