Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 3.5e-91 338.2 162 100.0
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 3.1e-63 245.4 146 77.4
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 6.5e-61 237.7 151 72.8
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 5.5e-60 234.6 150 72.0
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 7.1e-60 234.2 165 68.5
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 1.1e-57 226.9 139 74.1
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 3.3e-57 225.3 151 70.9
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 6.3e-56 221.1 148 69.6
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 6.9e-55 217.6 128 79.7
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 6.5e-53 211.1 136 70.6
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.5e-52 209.1 136 69.9
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 4.2e-52 208.4 141 66.0
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 9.3e-52 207.2 142 65.5
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 9.3e-52 207.2 136 69.1
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.2e-51 206.8 148 64.9
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.6e-51 206.5 148 64.9
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 2.1e-51 206.1 142 66.2
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.7e-51 205.7 144 65.3
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 4.6e-51 204.9 142 65.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 7.9e-51 204.1 144 65.3
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 7.9e-51 204.1 135 70.4
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 7.9e-51 204.1 139 66.9
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 7.9e-51 204.1 140 65.0
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 1.0e-50 203.8 139 64.7
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 1.0e-50 203.8 142 66.9
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.3e-50 203.4 145 64.1
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.3e-50 203.4 140 64.3
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.8e-50 203.0 142 64.8
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 2.3e-50 202.6 142 64.8
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 3.0e-50 202.2 143 63.6
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 3.9e-50 201.8 146 67.8
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 8.7e-50 200.7 139 66.2
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 1.1e-49 200.3 152 59.9
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 2.5e-49 199.1 148 64.2
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 5.7e-49 198.0 149 64.4
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 2.8e-48 195.7 144 62.5
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 8.2e-48 194.1 138 63.8
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.1e-47 193.7 140 64.3
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.8e-47 193.0 123 66.7
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 2.4e-47 192.6 132 64.4
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 3.1e-47 192.2 148 61.5
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 9.0e-47 190.7 149 61.7
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.2e-46 190.3 142 64.1
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 2.0e-46 189.5 144 66.0
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 3.4e-46 188.7 142 62.7
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 5.9e-46 188.0 144 63.2
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 1.3e-45 186.8 149 62.4
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.7e-45 186.4 134 64.2
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 2.2e-45 186.0 142 63.4
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 2.2e-45 186.0 142 62.7
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 2.2e-45 186.0 125 64.0
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 2.9e-45 185.7 152 59.2
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 6.5e-45 184.5 145 62.8
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 8.5e-45 184.1 132 61.4
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.1e-44 183.7 142 62.7
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 3.2e-44 182.2 142 62.0
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 5.5e-44 181.4 143 61.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 9.4e-44 180.6 143 61.5
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 1.2e-43 180.3 143 60.8
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.2e-43 180.3 143 60.8
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.2e-43 180.3 150 58.7
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 1.2e-43 180.3 143 59.4
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 2.7e-43 179.1 143 60.8
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 2.7e-43 179.1 143 60.8
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 2.7e-43 179.1 143 60.8
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 3.6e-43 178.7 142 59.9
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 6.1e-43 177.9 149 55.7
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 6.1e-43 177.9 141 60.3
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 7.9e-43 177.6 147 57.1
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 7.9e-43 177.6 146 56.8
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.0e-42 177.2 147 59.2
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 2.3e-42 176.0 155 56.8
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 3.0e-42 175.6 151 58.9
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 8.8e-42 174.1 144 59.0
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.1e-41 173.7 144 59.0
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.3e-41 172.2 119 65.5
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 7.4e-41 171.0 134 58.2
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 7.4e-41 171.0 148 57.4
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 1.7e-40 169.9 148 56.1
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 6.3e-40 167.9 123 58.5
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 8.2e-40 167.5 123 61.8
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.4e-39 166.8 135 58.5
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 2.4e-39 166.0 137 56.9
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 3.1e-39 165.6 139 55.4
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 9.1e-39 164.1 146 54.8
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 9.1e-39 164.1 148 50.0
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 9.1e-39 164.1 145 53.1
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.3e-37 160.2 132 57.6
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 3.8e-37 158.7 131 56.5
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 5.0e-37 158.3 156 52.6
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 4.2e-36 155.2 171 48.0
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 2.7e-35 152.5 138 51.4
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 2.7e-35 152.5 138 51.4
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 2.7e-35 152.5 93 77.4
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 9.7e-33 144.1 93 66.7
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.3e-32 143.7 92 69.6
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 4.8e-32 141.7 125 53.6
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.7e-29 133.3 145 48.3
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 4.2e-28 128.6 199 38.7
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 1.6e-27 126.7 141 50.4
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.0e-26 124.0 85 65.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.8e-26 123.2 96 58.3
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 2.8e-24 115.9 117 44.4
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 1.1e-23 114.0 178 36.5
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.2e-22 110.5 147 41.5
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.6e-22 110.2 65 72.3
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 2.7e-22 109.4 124 40.3
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 3.5e-22 109.0 83 54.2
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 5.9e-22 108.2 134 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 5.5e-12 75.1 90 38.9
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 1.6e-11 73.6 78 48.7
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.8e-10 70.1 125 32.8
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 4.0e-10 68.9 138 31.9
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 4.4e-09 65.5 144 34.7
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.3e-08 63.9 58 50.0
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 1.3e-08 63.9 53 58.5
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 2.8e-08 62.8 57 47.4
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 3.1e-07 59.3 32 75.0
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.6e-06 57.0 45 60.0
Cfa005130 Carpinus fangiana HOM05D000013 ORTHO05D000011 4.5e-06 55.5 32 68.8


User provided reference genes

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