Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 3.1e-159 565.1 289 100.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 8.4e-112 407.5 290 72.8
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.9e-111 406.4 287 74.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.3e-109 400.2 287 72.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.3e-108 395.6 292 73.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.4e-108 394.4 286 71.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.4e-106 389.4 288 70.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.1e-106 389.0 285 69.8
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 6.9e-106 387.9 316 67.1
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.2e-105 387.1 282 69.9
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.6e-105 386.0 288 68.8
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.6e-105 386.0 287 71.1
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.6e-105 386.0 286 71.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 9.9e-105 384.0 282 70.6
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-104 383.6 284 72.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.2e-104 382.9 290 68.6
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.2e-104 382.9 280 72.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.9e-104 382.5 288 66.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.9e-104 382.5 285 68.8
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.9e-104 382.5 285 69.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 6.4e-104 381.3 267 73.4
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 8.4e-104 380.9 289 67.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.1e-103 380.6 284 70.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.1e-103 380.6 247 77.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.9e-103 379.8 291 69.8
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.5e-103 378.3 290 67.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 9.3e-103 377.5 285 69.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.6e-102 376.7 292 69.2
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.5e-102 375.6 290 67.6
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 6.0e-102 374.8 284 66.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 6.0e-102 374.8 309 65.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 6.0e-102 374.8 286 69.2
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 7.9e-102 374.4 284 66.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 7.9e-102 374.4 287 68.3
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.3e-101 373.6 247 76.1
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-101 372.9 295 66.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.0e-101 372.5 282 69.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.9e-101 372.1 290 67.2
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.9e-101 372.1 317 62.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.1e-101 371.7 295 66.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.1e-101 371.7 284 68.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 6.7e-101 371.3 291 68.0
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 6.7e-101 371.3 286 68.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 8.7e-101 370.9 285 67.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-100 370.5 289 67.8
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.5e-100 370.2 284 65.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-100 369.8 287 67.6
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 68.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.5e-100 369.4 287 66.2
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.3e-100 369.0 285 67.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 3.3e-100 369.0 285 67.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.3e-100 368.6 286 68.5
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.4e-100 367.9 287 65.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.6e-99 366.7 284 66.5
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.7e-99 365.5 262 71.8
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.7e-99 365.5 233 79.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.4e-98 363.6 252 75.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.4e-98 362.8 284 65.8
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 4.0e-98 362.1 245 73.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.0e-98 362.1 287 65.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 9.0e-98 360.9 233 76.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.5e-97 360.1 222 79.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.0e-97 359.8 284 64.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.0e-97 359.8 272 70.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.6e-97 359.4 284 65.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-97 358.6 245 73.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.6e-97 357.8 284 65.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.0e-96 357.5 284 66.2
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.2e-96 356.3 232 75.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.9e-96 355.9 284 64.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.9e-96 355.9 284 64.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.9e-96 355.9 229 78.2
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.8e-96 355.5 287 64.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.8e-96 355.5 245 73.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.8e-96 355.5 232 74.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.5e-96 354.8 243 73.3
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.4e-95 353.6 231 74.5
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.9e-95 353.2 236 74.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.2e-95 352.4 284 64.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.2e-95 352.4 229 76.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 4.2e-95 352.1 230 76.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.2e-95 352.1 229 76.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-94 350.5 262 68.7
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.7e-94 349.4 223 77.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.7e-94 349.4 284 64.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.7e-94 349.4 234 74.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.7e-94 349.4 247 72.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 4.6e-94 348.6 290 66.2
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 6.0e-94 348.2 245 71.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 6.0e-94 348.2 245 71.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 6.0e-94 348.2 245 71.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.3e-93 347.1 284 63.0
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.9e-92 343.2 251 70.1
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.5e-92 342.8 295 62.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 3.3e-92 342.4 285 64.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.3e-92 342.4 286 63.3
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.6e-91 340.1 266 68.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.8e-91 339.3 289 61.6
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.8e-91 339.3 289 61.6
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-90 336.7 272 66.5
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.3e-88 330.5 278 62.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.7e-88 330.1 279 62.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.7e-88 330.1 253 67.2
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.2e-87 324.7 232 70.3
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.9e-86 321.2 245 68.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.3e-85 319.7 232 66.4
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.3e-83 313.9 271 60.5
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.8e-83 312.8 230 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.1e-82 310.8 240 66.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.1e-82 308.9 233 67.0
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.9e-82 308.1 256 62.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 9.1e-82 307.8 204 74.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 9.1e-82 307.8 202 75.2
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.4e-81 305.8 200 77.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 7.7e-81 304.7 202 75.2
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.2e-80 303.1 194 77.8
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.9e-79 300.1 284 57.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.9e-79 300.1 199 73.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.7e-78 296.2 204 72.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.6e-76 289.7 233 67.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.6e-76 289.7 232 63.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.7e-76 288.5 231 66.2
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.7e-76 287.7 238 65.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.8e-75 286.2 199 72.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.8e-74 283.5 221 67.0
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-72 277.3 199 70.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 7.2e-71 271.6 240 56.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 8.8e-69 264.6 238 58.0
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.5e-68 263.8 167 79.0
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.8e-67 258.8 253 53.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 6.3e-67 258.5 246 54.9
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.8e-66 256.9 189 71.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 7.7e-65 251.5 192 70.3
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 9.4e-63 244.6 242 52.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.4e-58 230.7 227 52.0
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.9e-55 220.3 207 59.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.4e-55 218.0 287 46.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.2e-53 212.2 149 71.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.3e-51 207.6 146 73.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.7e-51 206.1 127 78.0
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-42 177.6 131 67.2
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.7e-41 173.3 131 67.2
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.3e-39 166.0 158 59.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.2e-37 159.1 131 62.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.8e-36 155.6 99 77.8
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.8e-36 155.6 99 77.8
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-32 143.7 124 60.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.3e-31 139.8 118 64.4
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.4e-28 129.4 157 49.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 72 81.9
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 9.2e-26 121.7 72 80.6
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 72 80.6
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 72 80.6
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.6e-25 120.9 72 80.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.6e-23 112.5 225 34.2
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.8e-22 110.2 90 62.2
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.8e-21 105.5 75 70.7
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-16 90.5 67 68.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.6e-16 89.0 64 70.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 8.1e-14 82.0 67 65.7
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 6.8e-13 79.0 66 62.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 4.4e-12 76.3 64 60.9
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 3.8e-11 73.2 82 52.4
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.4e-11 72.4 42 81.0
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.2e-10 70.1 64 59.4
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 7.1e-10 68.9 54 68.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 9.3e-10 68.6 42 73.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.3e-08 63.9 209 27.3
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.1e-07 61.6 38 71.1
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.1e-07 61.6 38 71.1
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 4.3e-07 59.7 62 51.6


User provided reference genes

Program Settings