Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1073T40 Lonicera japonica HOM05D003466 ORTHO05D004102 1.1e-25 119.0 55 100.0
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 9.0e-15 82.8 38 97.4
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 2.0e-14 81.6 38 94.7
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 2.0e-14 81.6 38 97.4
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 2.0e-14 81.6 38 94.7
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 2.6e-14 81.3 38 94.7
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 3.4e-14 80.9 38 94.7
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 3.4e-14 80.9 37 94.6
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 3.4e-14 80.9 37 94.6
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 3.4e-14 80.9 38 94.7
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 4.5e-14 80.5 36 97.2
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 4.5e-14 80.5 38 92.1
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 4.5e-14 80.5 36 97.2
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 5.8e-14 80.1 38 92.1
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 5.8e-14 80.1 38 92.1
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 92.1
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 92.1
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 94.7
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 92.1
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 92.1
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 92.1
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 7.6e-14 79.7 38 94.7
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 1.0e-13 79.3 38 92.1
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.0e-13 79.3 38 92.1
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 1.0e-13 79.3 38 92.1
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 1.7e-13 78.6 38 92.1
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 1.7e-13 78.6 38 92.1
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 2.2e-13 78.2 38 92.1
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 2.2e-13 78.2 38 92.1
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 2.2e-13 78.2 38 92.1
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 2.9e-13 77.8 36 91.7
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 2.9e-13 77.8 38 92.1
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 2.9e-13 77.8 37 91.9
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 2.9e-13 77.8 38 89.5
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 3.8e-13 77.4 38 89.5
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 3.8e-13 77.4 38 89.5
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 3.8e-13 77.4 38 89.5
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 3.8e-13 77.4 38 86.8
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 5.0e-13 77.0 38 89.5
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 5.0e-13 77.0 38 89.5
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 5.0e-13 77.0 38 86.8
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 6.5e-13 76.6 38 86.8
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 6.5e-13 76.6 38 89.5
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 8.4e-13 76.3 37 89.2
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 8.4e-13 76.3 38 89.5
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 8.4e-13 76.3 38 89.5
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 8.4e-13 76.3 38 86.8
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 1.1e-12 75.9 36 91.7
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 1.1e-12 75.9 35 91.4
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.4e-12 75.5 38 86.8
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.4e-12 75.5 38 86.8
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 1.4e-12 75.5 38 86.8
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 1.9e-12 75.1 38 86.8
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.5e-12 74.7 38 84.2
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 3.2e-12 74.3 38 84.2
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 3.2e-12 74.3 38 84.2
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 3.2e-12 74.3 38 84.2
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 4.2e-12 73.9 38 84.2
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 4.2e-12 73.9 38 86.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 4.2e-12 73.9 38 84.2
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 5.5e-12 73.6 38 81.6
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 5.5e-12 73.6 38 81.6
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 5.5e-12 73.6 38 81.6
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 5.5e-12 73.6 38 84.2
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 7.1e-12 73.2 37 81.1
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 7.1e-12 73.2 36 88.9
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 9.3e-12 72.8 38 92.1
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.2e-11 72.4 35 85.7
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.2e-11 72.4 37 83.8
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 1.2e-11 72.4 38 81.6
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 1.6e-11 72.0 36 83.3
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.1e-11 71.6 36 86.1
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-11 71.6 51 66.7
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 2.1e-11 71.6 36 86.1
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 2.1e-11 71.6 38 81.6
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 3.5e-11 70.9 36 86.1
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 3.5e-11 70.9 38 89.5
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 4.6e-11 70.5 32 96.9
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 4.6e-11 70.5 37 81.1
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 4.6e-11 70.5 38 78.9
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 4.6e-11 70.5 35 88.6
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 6.1e-11 70.1 38 81.6
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 83.3
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 83.3
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 83.3
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 83.3
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 83.3
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.9e-11 69.7 33 90.9
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 7.9e-11 69.7 33 90.9
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 7.9e-11 69.7 36 80.6
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 1.0e-10 69.3 35 85.7
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 1.3e-10 68.9 38 86.8
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.8e-10 68.6 38 84.2
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.8e-10 68.6 38 84.2
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 2.3e-10 68.2 36 80.6
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 2.3e-10 68.2 36 80.6
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.3e-10 68.2 36 80.6
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 2.3e-10 68.2 33 87.9
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.3e-10 68.2 33 87.9
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.3e-10 68.2 33 87.9
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 2.3e-10 68.2 34 82.4
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 82.9
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 82.9
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 82.9
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 3.0e-10 67.8 36 80.6
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 82.9
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 3.0e-10 67.8 36 80.6
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 82.9
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 85.7
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 3.0e-10 67.8 35 85.7
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 3.9e-10 67.4 38 81.6
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 5.1e-10 67.0 38 81.6
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 5.1e-10 67.0 38 81.6
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 5.1e-10 67.0 38 81.6
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 8.7e-10 66.2 34 79.4
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 8.7e-10 66.2 35 80.0
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 8.7e-10 66.2 35 80.0
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 1.1e-09 65.9 38 81.6
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 5.7e-09 63.5 38 76.3
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 6.3e-08 60.1 35 65.7
C02p09480 Brassica napus HOM05D003466 ORTHO05D004102 1.2e-06 55.8 33 72.7
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.0e-06 55.1 32 75.0


User provided reference genes

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