Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 8.0e-132 473.8 243 100.0
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 1.9e-77 293.1 241 69.7
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 6.2e-76 288.1 240 67.9
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.9e-72 276.6 241 66.0
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.0e-70 270.8 246 64.2
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 2.8e-68 262.7 241 62.7
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 4.1e-67 258.8 246 59.8
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 5.3e-67 258.5 242 62.8
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 6.9e-67 258.1 232 62.5
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 6.9e-67 258.1 216 67.6
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 1.2e-66 257.3 259 56.8
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.5e-66 256.9 242 62.8
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 2.6e-66 256.1 231 62.8
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 4.5e-66 255.4 238 61.8
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.0e-65 254.2 237 62.9
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.0e-65 254.2 237 62.9
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.2e-65 253.1 237 63.7
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 5.0e-65 251.9 237 63.3
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.5e-65 251.5 240 62.5
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.5e-65 251.5 240 62.5
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 2.5e-64 249.6 237 60.3
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.6e-63 246.9 239 61.1
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 2.7e-63 246.1 240 59.2
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 4.6e-63 245.4 248 59.3
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 4.6e-63 245.4 248 61.3
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 1.8e-62 243.4 242 60.3
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 3.9e-62 242.3 235 60.0
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 6.7e-62 241.5 238 58.4
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.1e-61 240.7 242 59.5
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 2.0e-61 240.0 248 56.0
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 9.7e-61 237.7 253 55.3
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 1.7e-60 236.9 253 56.5
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 1.7e-60 236.9 237 60.8
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.2e-60 236.5 238 60.1
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 6.3e-60 235.0 237 60.3
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 1.1e-59 234.2 237 56.5
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 2.4e-59 233.0 250 56.4
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 3.1e-59 232.6 241 55.6
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 4.1e-59 232.3 209 61.7
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 5.3e-59 231.9 221 60.6
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 5.9e-58 228.4 245 51.4
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.3e-57 227.3 208 63.0
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 8.5e-57 224.6 243 55.1
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 1.4e-56 223.8 239 54.8
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 1.4e-56 223.8 194 62.9
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 1.4e-56 223.8 209 59.8
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 1.9e-56 223.4 206 60.7
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 2.5e-56 223.0 207 60.4
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 3.2e-56 222.6 242 54.1
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 1.6e-55 220.3 237 55.3
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 2.1e-55 219.9 227 56.8
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 3.6e-55 219.2 220 56.4
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 3.6e-55 219.2 245 52.7
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 3.6e-55 219.2 244 56.1
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 7.9e-55 218.0 234 54.7
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 7.9e-55 218.0 274 50.0
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 5.1e-54 215.3 273 49.5
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 5.1e-54 215.3 223 56.5
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.1e-53 214.2 225 53.8
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 3.3e-53 212.6 231 54.1
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 5.7e-53 211.8 236 53.4
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 1.7e-52 210.3 226 53.1
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 4.8e-52 208.8 224 53.6
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 6.3e-52 208.4 219 55.3
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 8.2e-52 208.0 216 57.9
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 1.4e-51 207.2 184 62.5
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.8e-51 206.8 189 59.8
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.8e-51 206.8 189 59.8
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 9.1e-51 204.5 288 46.9
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 1.5e-50 203.8 189 59.3
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 1.5e-50 203.8 222 55.0
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.0e-50 203.4 238 52.1
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 2.6e-50 203.0 181 61.9
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 4.5e-50 202.2 231 53.7
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 7.7e-50 201.4 185 62.7
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 1.0e-49 201.1 217 53.9
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 1.3e-49 200.7 190 58.9
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 1.3e-49 200.7 192 58.3
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 2.9e-49 199.5 269 45.4
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 5.0e-49 198.7 225 52.9
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 1.1e-48 197.6 172 66.9
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 1.5e-48 197.2 192 59.9
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 2.5e-48 196.4 243 51.4
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 2.5e-48 196.4 245 48.6
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 9.4e-48 194.5 243 51.0
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 3.6e-47 192.6 239 51.9
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 6.1e-47 191.8 205 54.6
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 5.2e-46 188.7 194 54.1
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.1e-43 181.0 171 59.6
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 3.1e-43 179.5 140 64.3
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 3.1e-43 179.5 234 45.7
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 1.6e-42 177.2 131 66.4
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 3.8e-41 172.6 280 41.8
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 1.9e-40 170.2 121 68.6
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 2.5e-40 169.9 228 45.6
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 2.7e-39 166.4 222 46.8
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 1.8e-38 163.7 157 54.8
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 5.2e-38 162.2 201 51.2
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 2.0e-37 160.2 171 53.8
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 1.8e-35 153.7 252 43.7
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 9.4e-32 141.4 166 47.6
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.6e-31 140.6 105 69.5
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 5.4e-27 125.6 130 51.5
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 9.1e-27 124.8 195 48.2
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 1.0e-25 121.3 192 40.1
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 5.0e-25 119.0 194 38.7
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 8.6e-25 118.2 132 47.0
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 4.5e-18 95.9 146 51.4
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 2.9e-17 93.2 67 70.1
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 1.1e-16 91.3 150 39.3
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 1.9e-16 90.5 116 49.1
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 9.5e-16 88.2 116 48.3
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 1.2e-15 87.8 99 59.6
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 6.1e-15 85.5 50 80.0
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 6.8e-14 82.0 121 46.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.8e-13 79.0 52 71.2
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 2.4e-11 73.6 40 87.5
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.3e-09 67.0 91 51.6
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 1.1e-08 64.7 49 59.2
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 4.3e-08 62.8 140 37.9
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 5.6e-08 62.4 111 35.1
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 5.6e-08 62.4 72 48.6
Lsat_1_v5_gn_5_54781 Lactuca sativa HOM05D000375 ORTHO05D000240 1.1e-06 58.2 37 62.2


User provided reference genes

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