Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 1.2e-163 579.7 285 100.0
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 3.4e-97 359.0 263 71.5
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 1.6e-83 313.5 263 62.4
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 2.6e-81 306.2 263 59.7
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.3e-80 303.9 263 60.8
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 3.8e-80 302.4 264 60.2
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 8.4e-80 301.2 266 60.5
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.9e-79 300.1 263 60.5
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 2.4e-79 299.7 264 60.2
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 4.2e-79 298.9 263 60.1
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 7.1e-79 298.1 249 62.7
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 9.2e-79 297.7 264 58.7
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 3.5e-78 295.8 263 58.6
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 6.0e-78 295.0 269 58.0
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 1.0e-77 294.3 264 59.1
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 3.0e-77 292.7 264 59.1
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.0e-77 292.7 264 59.1
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 3.0e-77 292.7 258 57.4
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 3.9e-77 292.4 264 58.0
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 3.9e-77 292.4 262 58.8
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 5.1e-77 292.0 264 57.6
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 6.6e-77 291.6 264 58.7
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 6.6e-77 291.6 263 56.7
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.1e-76 290.8 264 58.7
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.5e-76 289.7 264 59.5
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.5e-76 289.7 258 57.0
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 3.3e-76 289.3 264 58.3
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 5.6e-76 288.5 263 55.5
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 5.6e-76 288.5 263 55.5
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 5.6e-76 288.5 264 57.2
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 7.3e-76 288.1 265 57.7
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 7.3e-76 288.1 265 57.7
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 7.3e-76 288.1 263 56.3
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 7.3e-76 288.1 263 55.5
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 2.1e-75 286.6 264 56.8
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 3.6e-75 285.8 263 57.0
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 3.6e-75 285.8 263 57.0
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.6e-75 285.8 264 58.7
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.6e-75 285.8 264 58.7
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 3.6e-75 285.8 265 57.0
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 8.1e-75 284.6 264 58.0
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 8.1e-75 284.6 264 58.0
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 8.1e-75 284.6 260 58.5
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 3.1e-74 282.7 264 57.2
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 4.0e-74 282.3 264 57.2
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 4.0e-74 282.3 264 55.7
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 4.0e-74 282.3 264 56.4
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 6.9e-74 281.6 260 57.7
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 9.0e-74 281.2 264 57.6
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 1.2e-73 280.8 264 56.8
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 3.4e-73 279.3 263 55.5
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 4.4e-73 278.9 263 57.0
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 7.6e-73 278.1 281 54.8
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 7.6e-73 278.1 263 58.2
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 7.6e-73 278.1 263 55.9
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.3e-72 277.3 263 55.1
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 8.4e-72 274.6 264 55.7
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 3.2e-71 272.7 264 54.5
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 5.4e-71 271.9 264 54.5
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 7.1e-71 271.6 264 55.3
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 7.1e-71 271.6 247 58.3
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 9.3e-71 271.2 265 55.1
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 1.2e-70 270.8 258 57.4
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 2.7e-70 269.6 265 54.3
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 1.7e-69 266.9 264 54.5
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 3.0e-69 266.2 263 54.0
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 3.0e-69 266.2 247 56.3
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 3.0e-69 266.2 264 54.5
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 3.9e-69 265.8 277 52.3
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 6.6e-69 265.0 265 55.1
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 1.1e-68 264.2 264 53.8
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 1.1e-68 264.2 263 54.0
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 5.6e-68 261.9 264 54.5
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 7.3e-68 261.5 282 51.4
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 1.3e-67 260.8 264 53.8
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 1.3e-67 260.8 264 53.8
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.3e-67 260.8 264 55.7
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 1.3e-67 260.8 264 54.2
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 2.1e-67 260.0 264 53.4
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 2.1e-67 260.0 264 54.5
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 3.6e-67 259.2 266 53.0
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 8.1e-67 258.1 261 54.4
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 8.1e-67 258.1 261 54.4
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 8.1e-67 258.1 261 54.4
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 1.1e-66 257.7 266 53.4
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 1.4e-66 257.3 242 57.9
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 2.4e-66 256.5 260 54.2
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 6.9e-66 255.0 257 53.7
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.2e-65 254.2 266 51.9
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 1.5e-65 253.8 266 52.6
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 3.4e-65 252.7 266 52.3
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 4.5e-65 252.3 264 53.0
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 2.9e-64 249.6 261 52.5
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 3.8e-64 249.2 262 53.1
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 4.9e-64 248.8 266 51.1
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 4.9e-64 248.8 241 56.4
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 1.1e-63 247.7 266 50.8
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 1.4e-63 247.3 262 53.1
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 1.4e-63 247.3 244 54.5
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 1.9e-63 246.9 260 51.2
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 5.4e-63 245.4 265 50.9
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 1.2e-62 244.2 246 54.1
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 1.6e-62 243.8 263 51.7
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 2.7e-62 243.0 244 53.3
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 3.0e-61 239.6 265 49.8
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.5e-57 227.3 263 46.8
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.2e-56 223.4 183 64.5
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 1.1e-55 221.1 231 53.7
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 9.3e-55 218.0 245 49.0
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 6.0e-54 215.3 262 46.2
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 2.3e-53 213.4 261 45.6
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 3.9e-53 212.6 263 44.9
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 1.9e-52 210.3 268 45.1
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.8e-51 206.5 182 59.9
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 1.4e-50 204.1 302 42.4
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 4.0e-50 202.6 215 54.0
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.0e-49 200.3 240 47.9
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.7e-46 189.9 240 46.7
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 1.8e-45 187.2 149 63.8
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 5.7e-44 182.2 149 62.4
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.1e-42 177.9 183 51.9
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.5e-40 168.3 241 41.9
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 1.1e-39 167.9 276 40.2
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 5.5e-39 165.6 149 57.0
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 1.7e-32 144.1 154 48.1
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.8e-29 131.7 116 55.2
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.3e-27 127.9 93 68.8
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.3e-27 127.9 117 56.4
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 2.8e-27 126.7 121 56.2
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.1e-22 110.5 224 38.4
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 1.3e-16 91.3 274 29.6
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 8.0e-14 82.0 42 88.1
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 1.2e-12 78.2 65 63.1
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 7.0e-10 68.9 59 59.3
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.6e-09 67.8 89 38.2
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.0e-09 67.4 58 56.9
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 2.0e-09 67.4 58 56.9
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.2e-07 58.9 53 52.8
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 9.4e-07 58.5 53 52.8


User provided reference genes

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