Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 3.3e-98 361.7 181 100.0
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 3.3e-98 361.7 181 100.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.8e-78 295.0 173 85.0
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 5.5e-77 291.2 175 81.7
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 7.9e-76 287.3 181 80.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 2.3e-75 285.8 181 77.3
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 3.0e-75 285.4 181 80.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.7e-75 284.3 178 80.3
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.1e-74 283.5 180 80.6
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.3e-74 282.0 177 78.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.4e-74 280.8 172 80.2
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.3e-73 280.0 176 77.8
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.7e-73 279.6 178 78.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-73 279.3 177 78.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.2e-73 279.3 173 76.9
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.8e-73 278.9 178 74.7
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.7e-73 278.5 181 77.9
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 8.2e-73 277.3 178 77.5
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 8.2e-73 277.3 176 79.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 8.2e-73 277.3 174 78.7
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-72 276.9 168 81.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.1e-72 276.9 158 86.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.8e-72 276.2 178 76.4
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 2.4e-72 275.8 155 86.5
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.1e-72 275.4 170 78.8
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 4.1e-72 275.0 156 84.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.6e-71 272.3 153 86.9
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-71 272.3 157 86.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.6e-71 272.3 181 78.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 5.9e-71 271.2 181 77.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 7.7e-71 270.8 168 81.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.0e-70 270.4 181 77.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.3e-70 270.0 151 88.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.3e-70 270.0 181 76.8
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.3e-70 270.0 181 77.3
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.7e-70 269.6 153 85.6
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.8e-70 268.5 181 76.2
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 3.8e-70 268.5 155 84.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.8e-70 268.5 155 83.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.8e-70 268.5 153 85.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 8.5e-70 267.3 167 78.4
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-69 266.9 172 77.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-69 266.9 180 76.1
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-69 266.2 153 85.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.5e-69 265.8 153 85.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 3.2e-69 265.4 180 76.1
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.2e-69 265.0 167 77.8
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 7.2e-69 264.2 180 75.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.2e-69 264.2 172 76.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 7.2e-69 264.2 152 86.2
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.6e-68 261.9 157 82.2
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.6e-68 261.9 174 77.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.6e-68 261.9 153 83.7
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.0e-67 260.4 153 83.7
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.4e-67 260.0 175 75.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.8e-67 259.6 180 75.0
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.8e-67 259.6 153 83.0
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.8e-67 259.6 180 74.4
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.8e-67 259.6 180 73.9
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.8e-67 259.6 153 81.7
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 2.3e-67 259.2 153 81.7
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.0e-67 258.8 180 74.4
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.0e-67 258.8 228 61.4
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 5.2e-67 258.1 152 81.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 5.2e-67 258.1 173 75.1
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.2e-67 258.1 168 78.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.2e-67 258.1 165 78.8
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 5.2e-67 258.1 151 82.8
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.7e-67 257.7 168 76.8
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.7e-67 257.7 180 73.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.8e-67 257.3 176 73.3
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.8e-67 257.3 180 73.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.5e-66 256.5 176 73.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-66 256.5 176 73.3
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-66 256.5 154 80.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.0e-66 256.1 148 85.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-66 256.1 154 79.9
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-66 256.1 154 79.9
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-66 256.1 176 73.3
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.0e-66 256.1 154 81.2
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.0e-66 256.1 176 74.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.6e-66 255.8 180 71.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.6e-66 255.8 157 78.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-66 255.8 180 73.9
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.6e-66 255.8 178 70.8
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.4e-66 255.0 168 74.4
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-66 255.0 180 72.8
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-66 255.0 180 72.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 5.7e-66 254.6 168 74.4
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.7e-66 254.6 176 72.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 9.7e-66 253.8 166 75.3
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 9.7e-66 253.8 180 72.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 9.7e-66 253.8 168 75.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 9.7e-66 253.8 155 78.1
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.3e-65 253.4 154 79.2
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-65 253.4 181 71.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.3e-65 253.4 176 72.7
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.7e-65 253.1 168 73.8
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.7e-65 253.1 159 78.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.7e-65 253.1 177 74.6
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.2e-65 252.7 173 73.4
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-65 251.9 166 74.1
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-65 251.9 168 73.2
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-65 251.9 168 73.2
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.7e-65 251.9 153 81.7
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.8e-65 251.5 166 74.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.8e-65 251.5 157 77.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 6.3e-65 251.1 155 78.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.3e-65 251.1 180 71.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 8.2e-65 250.8 155 78.1
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 8.2e-65 250.8 155 78.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.1e-64 250.4 168 75.0
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.4e-64 250.0 180 71.7
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-64 249.2 155 78.1
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-64 249.2 155 78.1
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.4e-64 249.2 180 71.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.4e-64 249.2 155 79.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.1e-64 248.8 177 74.0
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.1e-64 248.8 158 77.2
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 7.0e-64 247.7 155 76.1
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 7.0e-64 247.7 155 76.1
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-63 246.1 155 76.8
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.0e-63 246.1 157 77.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 5.9e-63 244.6 180 68.9
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.8e-62 241.9 185 66.5
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 5.0e-62 241.5 183 66.1
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 6.5e-62 241.1 181 67.4
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.1e-61 240.4 154 76.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 4.2e-61 238.4 153 75.2
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.5e-61 238.0 154 76.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.7e-60 235.7 168 70.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.6e-60 235.3 180 65.6
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 6.1e-60 234.6 155 74.2
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 6.1e-60 234.6 155 74.2
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 6.1e-60 234.6 160 72.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.7e-59 231.1 142 76.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.2e-58 230.3 160 71.9
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 9.1e-56 220.7 153 70.6
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.3e-54 216.9 157 68.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 5.0e-54 214.9 144 69.4
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.3e-51 206.1 134 77.6
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 6.8e-51 204.5 110 87.3
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.5e-47 191.8 155 62.6
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 7.7e-47 191.0 132 71.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.2e-45 184.5 108 88.0
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 4.0e-43 178.7 135 63.0
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.8e-43 177.9 153 56.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.2e-42 177.2 136 64.7
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 7.5e-42 174.5 112 72.3
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.1e-40 170.6 136 61.8
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.1e-40 169.1 156 59.0
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 7.8e-39 164.5 136 59.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 2.0e-34 149.8 112 70.5
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.2e-31 140.6 120 55.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 8.6e-30 134.4 90 76.7
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 5.6e-29 131.7 88 77.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.3e-29 131.3 105 67.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.0e-28 127.9 117 61.5
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-26 124.0 102 58.8
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.2e-25 119.8 96 64.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.6e-23 112.1 163 40.5
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-22 109.0 144 37.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-21 106.7 145 41.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-21 106.7 145 41.4
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.5e-21 106.3 105 53.3
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-21 106.3 71 73.2
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.6e-20 103.6 57 82.5
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.2e-19 98.6 51 76.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.3e-17 91.3 60 71.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.9e-16 90.1 55 78.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.4e-16 89.7 100 44.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.4e-16 89.7 100 44.0
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 5.4e-16 88.6 71 60.6
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 7.8e-15 84.7 101 42.6
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.5e-10 70.5 47 63.8
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.5e-10 70.5 95 42.1


User provided reference genes

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