Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 3.1e-276 954.5 481 100.0
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 2.6e-190 669.1 481 71.5
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.5e-187 658.3 484 72.7
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.1e-184 649.4 481 69.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.1e-184 649.4 481 70.1
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.8e-183 646.4 488 71.7
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 1.8e-183 646.4 475 72.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.2e-182 643.7 481 69.6
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.2e-182 643.7 482 70.1
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.3e-181 640.2 481 70.1
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.9e-181 639.0 476 69.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 6.4e-181 637.9 483 71.0
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 6.4e-181 637.9 483 69.8
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.0e-178 630.6 484 67.6
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.3e-178 630.2 482 69.1
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.7e-178 629.8 480 69.6
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 6.6e-178 627.9 474 69.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 4.3e-177 625.2 483 68.1
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 9.5e-177 624.0 475 67.6
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.3e-175 619.4 474 67.7
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.2e-175 618.2 480 69.0
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 6.8e-175 617.8 479 69.7
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 5.8e-174 614.8 483 70.6
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 8.3e-173 610.9 468 68.6
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.1e-172 610.5 489 66.7
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.1e-172 610.5 479 66.8
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.4e-172 610.1 483 65.2
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 3.2e-172 609.0 478 69.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 7.0e-172 607.8 477 69.0
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 1.6e-171 606.7 477 69.0
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.7e-171 605.9 456 68.6
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 6.0e-171 604.7 477 68.8
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 7.8e-171 604.4 488 68.0
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 8.6e-170 600.9 481 65.7
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.1e-169 600.5 481 64.9
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 4.7e-168 595.1 478 67.6
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 4.7e-168 595.1 477 64.8
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.1e-167 594.0 481 64.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 3.1e-167 592.4 484 63.8
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 8.9e-167 590.9 445 67.9
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.5e-166 590.1 478 63.8
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.6e-166 589.3 483 65.4
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 4.4e-166 588.6 488 64.5
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 7.5e-166 587.8 490 62.7
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.9e-164 583.2 492 63.2
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 2.7e-163 579.3 481 64.4
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.0e-163 578.2 461 65.1
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 6.0e-163 578.2 479 65.6
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.0e-162 577.4 478 63.6
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 6.6e-162 574.7 474 66.0
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 6.6e-162 574.7 476 63.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 8.6e-162 574.3 475 63.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 8.6e-162 574.3 520 60.2
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 3.3e-161 572.4 479 64.3
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 5.6e-161 571.6 482 63.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 9.6e-161 570.9 479 64.7
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.8e-159 566.6 477 63.7
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.4e-159 566.2 479 63.5
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.1e-159 565.8 484 63.8
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 4.0e-159 565.5 465 64.1
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 6.8e-159 564.7 487 62.2
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.5e-158 563.5 448 67.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 5.8e-158 561.6 482 62.7
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 7.6e-158 561.2 486 63.6
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 7.6e-158 561.2 481 64.4
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.9e-157 559.3 486 62.8
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.8e-157 558.9 485 62.7
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 5.4e-156 555.1 474 63.3
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 7.1e-156 554.7 474 63.3
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 9.2e-156 554.3 474 63.3
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.2e-155 553.9 491 61.7
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.1e-155 553.1 496 60.1
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.3e-154 550.4 474 63.1
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.3e-154 550.4 474 63.1
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.7e-154 550.1 481 62.2
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 2.3e-154 549.7 477 61.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.0e-154 549.3 477 62.3
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 5.1e-154 548.5 503 59.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.7e-154 547.7 477 62.1
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 1.1e-153 547.4 480 63.8
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-153 546.6 476 61.8
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-153 545.8 476 61.8
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-153 545.8 477 61.8
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 4.3e-153 545.4 471 61.6
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.3e-153 544.7 477 61.6
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.5e-150 537.0 469 62.5
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.6e-150 536.2 477 61.4
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 1.7e-149 533.5 425 64.7
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 4.9e-149 531.9 469 61.8
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.4e-148 529.6 477 60.0
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.7e-147 526.2 485 59.4
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 2.7e-147 526.2 477 60.2
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 9.0e-143 511.1 359 71.6
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 2.0e-142 510.0 447 61.7
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 4.9e-141 505.4 477 60.0
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.5e-139 499.2 463 59.8
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 2.5e-137 493.0 480 59.2
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 4.0e-135 485.7 601 49.9
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 5.3e-135 485.3 481 55.3
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 9.3e-132 474.6 454 55.5
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 3.5e-131 472.6 471 58.0
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-130 470.7 304 77.0
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 4.3e-129 465.7 481 54.3
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-128 463.8 421 60.6
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.1e-128 463.4 478 52.3
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 4.0e-127 459.1 301 75.4
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.9e-124 450.3 303 74.3
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 9.4e-108 394.8 456 52.2
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 4.1e-103 379.4 490 47.6
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 7.2e-100 368.6 214 81.8
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.2e-91 341.3 474 47.5
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.8e-90 337.4 374 49.2
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.1e-87 326.6 302 55.6
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 9.1e-87 325.1 259 64.5
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.9e-69 266.9 179 75.4
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 4.9e-64 249.6 286 46.2
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.3e-61 241.5 491 35.2
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 4.7e-59 233.0 305 46.2
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 2.1e-54 217.6 487 30.6
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 9.9e-41 172.2 253 42.7
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.8e-35 153.3 244 43.0
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-32 145.2 95 74.7
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.2e-32 144.4 121 58.7
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 3.5e-30 137.1 224 33.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 3.8e-24 117.1 62 83.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 3.8e-24 117.1 186 40.3
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.2e-22 112.1 81 66.7
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-15 89.0 61 75.4
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.1e-15 89.0 83 55.4


User provided reference genes

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