Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.5e-66 255.0 185 100.0
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 9.6e-53 210.7 185 81.6
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 4.7e-31 138.7 180 51.7
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.1e-29 134.0 188 47.9
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-29 134.0 172 59.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.0e-29 133.3 180 51.7
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.0e-29 133.3 180 53.9
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.3e-28 130.6 172 54.7
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 8.2e-28 127.9 185 58.4
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.4e-27 127.1 178 56.7
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.6e-26 123.6 181 51.9
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.6e-26 122.9 185 62.7
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 7.2e-24 114.8 188 46.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 7.2e-24 114.8 188 46.3
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.0e-22 109.0 186 51.1
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 6.7e-22 108.2 186 44.6
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.0e-21 106.7 175 54.9
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.6e-21 106.3 185 37.8
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.5e-21 104.8 188 41.0
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.3e-20 104.0 186 52.2
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 2.2e-20 103.2 187 49.2
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 2.2e-20 103.2 186 49.5
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 4.8e-20 102.1 178 49.4
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.1e-19 100.9 176 42.0
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-19 100.9 164 48.2
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.4e-19 100.5 173 41.0
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 9.1e-19 97.8 182 47.8
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 9.1e-19 97.8 190 47.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 3.5e-18 95.9 175 41.1
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 3.5e-18 95.9 184 59.2
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 5.9e-18 95.1 148 52.7
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.7e-18 94.7 190 47.4
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 7.7e-18 94.7 177 54.2
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.0e-17 94.4 178 38.2
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.7e-17 93.6 177 49.7
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.7e-17 93.6 183 56.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 6.5e-17 91.7 174 51.1
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 8.5e-17 91.3 144 58.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.1e-16 90.9 195 41.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-16 90.5 180 48.3
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.9e-16 90.1 181 47.5
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.9e-16 90.1 205 54.1
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.5e-16 89.7 172 54.7
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.2e-16 89.0 189 46.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 4.2e-16 89.0 56 62.5
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.2e-16 89.0 186 31.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.5e-16 88.6 174 41.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.5e-16 88.6 54 63.0
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 5.5e-16 88.6 152 50.7
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 7.2e-16 88.2 163 52.1
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.2e-16 88.2 145 37.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 7.2e-16 88.2 171 54.4
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 9.4e-16 87.8 178 47.2
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-15 87.4 177 48.0
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.1e-15 86.7 176 42.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 2.7e-15 86.3 172 40.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.7e-15 86.3 145 44.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.6e-15 85.9 184 53.8
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.7e-15 85.5 52 61.5
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.7e-15 85.5 183 51.9
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.7e-15 85.5 177 44.1
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 6.1e-15 85.1 169 57.4
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 6.1e-15 85.1 140 45.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 8.0e-15 84.7 172 51.7
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.0e-15 84.7 177 45.2
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.0e-14 84.3 183 43.2
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.0e-14 84.3 51 64.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.4e-14 84.0 180 46.7
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.8e-14 83.6 181 51.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.3e-14 83.2 170 54.1
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.3e-14 83.2 179 46.9
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 3.0e-14 82.8 182 46.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 5.2e-14 82.0 190 45.3
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 5.2e-14 82.0 179 45.3
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.2e-13 80.9 164 36.0
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.5e-13 80.5 143 65.7
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.0e-13 80.1 178 40.4
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.6e-13 79.7 175 53.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 4.4e-13 79.0 187 46.0
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 4.4e-13 79.0 47 59.6
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.4e-13 79.0 53 52.8
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 7.5e-13 78.2 143 58.0
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.5e-13 78.2 53 50.9
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 9.8e-13 77.8 146 40.4
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.3e-12 77.4 54 50.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-12 77.4 50 52.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-12 77.4 50 52.0
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.3e-12 77.4 50 52.0
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.3e-12 77.4 50 52.0
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.3e-12 77.4 50 52.0
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.3e-12 77.4 51 54.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.3e-12 77.4 48 56.2
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.3e-12 77.4 48 60.4
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.3e-12 77.4 218 45.4
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.7e-12 77.0 53 52.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.7e-12 77.0 53 52.8
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.7e-12 77.0 48 56.2
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.2e-12 76.6 49 61.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.8e-12 76.3 50 50.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.8e-12 76.3 50 50.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.8e-12 76.3 50 50.0
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.8e-12 76.3 50 50.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 3.7e-12 75.9 50 50.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 3.7e-12 75.9 50 50.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.7e-12 75.9 50 50.0
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 3.7e-12 75.9 233 46.8
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 3.7e-12 75.9 48 56.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 4.8e-12 75.5 173 46.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 4.8e-12 75.5 50 56.0
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 6.3e-12 75.1 168 31.0
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.1e-11 74.3 149 49.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-11 74.3 48 56.2
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.4e-11 73.9 144 45.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.8e-11 73.6 54 51.9
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.8e-11 73.6 50 46.0
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.8e-11 73.6 50 46.0
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.8e-11 73.6 50 46.0
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.8e-11 73.6 50 46.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.8e-11 73.6 217 47.5
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.8e-11 73.6 184 33.7
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.8e-11 73.6 48 52.1
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 3.1e-11 72.8 48 56.2
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 4.1e-11 72.4 180 39.4
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 4.1e-11 72.4 54 48.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 7.0e-11 71.6 52 51.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 7.0e-11 71.6 48 52.1
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 7.0e-11 71.6 166 30.7
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.1e-11 71.2 54 46.3
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.1e-11 71.2 54 46.3
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 9.1e-11 71.2 54 46.3
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 9.1e-11 71.2 54 46.3
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 9.1e-11 71.2 51 49.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.2e-10 70.9 200 46.5
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.0e-10 70.1 51 49.0
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 3.5e-10 69.3 49 55.1
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 4.5e-10 68.9 178 27.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.3e-09 67.4 48 52.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.3e-09 67.4 51 47.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.3e-09 67.4 51 47.1
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.3e-09 67.4 140 35.0
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 2.3e-09 66.6 44 61.4
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.8e-09 65.9 177 37.9
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.8e-09 65.9 55 43.6
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.8e-09 65.9 55 43.6
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 3.8e-09 65.9 143 50.3
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 3.8e-09 65.9 143 50.3
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.9e-08 63.5 44 50.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-08 63.2 52 42.3
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.7e-07 58.9 51 39.2
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-06 57.0 51 39.2
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.8e-06 57.0 130 31.5
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 3.0e-06 56.2 50 40.0
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.8e-06 54.7 51 39.2


User provided reference genes

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