Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 4.2e-74 282.3 301 100.0
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.0e-35 154.8 271 59.4
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 5.1e-27 125.9 109 60.6
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 1.1e-26 124.8 105 61.0
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 2.8e-25 120.2 101 59.4
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 2.4e-24 117.1 101 58.4
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 3.2e-21 106.7 99 57.6
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 6.7e-19 99.0 89 56.2
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 6.7e-19 99.0 114 47.4
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.1e-18 98.2 101 52.5
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.9e-18 97.4 95 52.6
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 2.5e-18 97.1 109 47.7
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 3.3e-18 96.7 106 48.1
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 7.4e-18 95.5 111 45.9
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 9.6e-18 95.1 83 56.6
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 1.3e-17 94.7 89 51.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.6e-17 94.4 83 56.6
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.6e-17 94.4 104 46.2
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.1e-17 94.0 87 51.7
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.1e-17 94.0 93 49.5
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.8e-17 93.6 95 52.6
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 3.7e-17 93.2 75 60.0
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 6.2e-17 92.4 92 51.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 8.1e-17 92.0 81 54.3
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 8.1e-17 92.0 104 48.1
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 8.1e-17 92.0 105 45.7
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.4e-16 91.3 92 47.8
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.4e-16 91.3 91 52.7
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.8e-16 90.9 102 50.0
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 3.1e-16 90.1 79 54.4
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 4.0e-16 89.7 109 45.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.0e-16 89.7 79 54.4
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 4.0e-16 89.7 103 45.6
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 4.0e-16 89.7 103 44.7
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 4.0e-16 89.7 83 53.0
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 5.3e-16 89.4 102 46.1
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 6.9e-16 89.0 107 44.9
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 6.9e-16 89.0 84 54.8
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 9.0e-16 88.6 98 45.9
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 9.0e-16 88.6 90 47.8
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 9.0e-16 88.6 78 52.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.5e-15 87.8 90 47.8
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 2.0e-15 87.4 80 53.8
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.0e-15 87.4 101 49.5
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 2.6e-15 87.0 91 48.4
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.6e-15 87.0 105 48.6
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 3.4e-15 86.7 80 52.5
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 4.5e-15 86.3 64 65.6
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 4.5e-15 86.3 80 52.5
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 4.5e-15 86.3 105 49.5
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 4.5e-15 86.3 105 49.5
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 5.8e-15 85.9 68 61.8
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 5.8e-15 85.9 84 50.0
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 7.6e-15 85.5 90 46.7
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 7.6e-15 85.5 79 53.2
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 7.6e-15 85.5 85 51.8
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 9.9e-15 85.1 81 54.3
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 9.9e-15 85.1 77 55.8
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 9.9e-15 85.1 85 50.6
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 9.9e-15 85.1 85 50.6
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 9.9e-15 85.1 86 50.0
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 9.9e-15 85.1 109 45.0
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.3e-14 84.7 79 53.2
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.3e-14 84.7 76 55.3
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.7e-14 84.3 85 50.6
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.2e-14 84.0 85 50.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.2e-14 84.0 85 50.6
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 2.2e-14 84.0 84 53.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.9e-14 83.6 85 50.6
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.9e-14 83.6 85 50.6
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 3.8e-14 83.2 87 47.1
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 4.9e-14 82.8 89 48.3
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 8.4e-14 82.0 86 46.5
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 8.4e-14 82.0 85 49.4
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.1e-13 81.6 98 43.9
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.1e-13 81.6 81 49.4
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.4e-13 81.3 85 49.4
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.9e-13 80.9 61 62.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.9e-13 80.9 95 45.3
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.9e-13 80.9 84 50.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 2.5e-13 80.5 61 62.3
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 2.5e-13 80.5 61 62.3
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 2.5e-13 80.5 61 62.3
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 2.5e-13 80.5 85 49.4
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.2e-13 79.7 81 48.1
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 5.5e-13 79.3 80 50.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 7.1e-13 79.0 79 49.4
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.6e-12 77.8 105 38.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.6e-12 77.8 74 51.4
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.1e-12 77.4 75 49.3
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 2.1e-12 77.4 100 42.0
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.7e-12 77.0 80 48.8
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.5e-12 76.6 85 47.1
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 4.6e-12 76.3 83 48.2
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 6.0e-12 75.9 87 46.0
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.3e-11 73.9 73 46.6
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 3.0e-11 73.6 95 44.2
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 3.0e-11 73.6 95 44.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 3.0e-11 73.6 83 44.6
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 7.4e-10 68.9 75 45.3
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 9.6e-10 68.6 80 43.8
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 9.6e-10 68.6 66 51.5
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.3e-09 68.2 82 43.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.1e-09 67.4 83 41.0
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.3e-08 62.8 56 55.4
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 5.3e-08 62.8 72 43.1
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 9.0e-08 62.0 55 54.5
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.5e-07 61.2 69 44.9
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.5e-07 61.2 86 43.0
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.6e-07 60.5 80 47.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 4.5e-07 59.7 58 51.7
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 5.8e-07 59.3 58 53.4
SEGI_37798 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.2e-06 57.4 57 47.4
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.9e-06 57.0 72 40.3
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 6.5e-06 55.8 57 45.6


User provided reference genes

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