Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.3e-177 626.3 337 100.0
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.4e-129 466.8 338 75.4
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 4.7e-90 335.5 313 61.3
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.5e-67 260.8 351 51.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.6e-66 257.3 335 52.5
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-65 254.6 333 51.7
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 7.6e-64 248.4 341 51.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-63 245.7 341 49.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-62 244.6 334 49.4
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.4e-62 243.4 346 50.3
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.5e-62 242.3 336 50.0
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.1e-61 240.4 340 49.4
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 4.6e-61 239.2 340 50.0
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.3e-60 236.9 346 48.3
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.3e-60 236.9 337 48.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.0e-60 236.5 346 48.3
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.7e-60 235.3 350 48.3
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.7e-60 235.0 346 48.0
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.5e-59 234.2 349 47.3
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 3.7e-58 229.6 344 48.0
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 6.2e-58 228.8 342 48.8
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 6.2e-58 228.8 344 49.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.1e-57 228.0 345 49.3
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.4e-56 223.0 342 48.5
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.2e-55 220.3 342 48.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.9e-55 219.2 340 47.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 6.5e-55 218.8 353 46.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 4.2e-54 216.1 347 45.8
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 5.5e-54 215.7 338 46.7
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 7.1e-54 215.3 346 50.9
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 2.1e-53 213.8 329 46.8
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.1e-53 213.8 336 46.1
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 4.6e-53 212.6 347 46.1
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-52 210.7 349 43.8
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.0e-52 209.9 320 49.7
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.1e-52 209.1 340 47.1
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-51 207.6 339 45.4
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.5e-51 207.6 340 47.6
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.9e-51 207.2 347 47.0
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 2.5e-51 206.8 341 46.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.3e-51 206.5 346 43.6
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 9.6e-51 204.9 339 45.4
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 9.6e-51 204.9 345 44.1
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-50 204.5 340 45.3
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.1e-50 203.8 330 46.1
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.8e-50 203.4 329 45.6
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.8e-50 202.6 340 45.0
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.2e-50 201.8 360 43.9
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.3e-49 199.1 340 45.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.0e-48 197.2 335 42.7
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 7.6e-48 195.3 354 42.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.6e-48 195.3 340 44.1
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.0e-47 194.9 326 44.8
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 5.0e-47 192.6 328 45.1
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 5.0e-47 192.6 316 51.9
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.5e-46 189.1 348 44.3
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.2e-45 188.0 321 43.0
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.1e-45 185.7 347 42.7
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.1e-44 182.6 342 42.7
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 8.7e-44 181.8 358 42.7
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 8.7e-44 181.8 332 41.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.9e-43 180.6 333 40.8
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 5.7e-43 179.1 345 40.9
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 8.2e-42 175.3 220 51.8
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 8.2e-42 175.3 220 51.8
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-41 174.9 220 51.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-41 174.9 220 51.8
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-41 174.5 220 51.8
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-41 174.5 220 51.8
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.4e-41 173.7 220 51.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-40 171.0 335 41.8
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 7.7e-40 168.7 362 39.0
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-38 164.9 345 38.8
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 5.5e-38 162.5 377 37.1
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 7.2e-38 162.2 381 37.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.6e-37 159.8 321 38.9
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 7.9e-37 158.7 323 38.7
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.0e-36 158.3 345 39.1
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.0e-36 158.3 321 39.9
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.3e-36 157.1 356 38.8
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 1.1e-35 154.8 204 57.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.7e-34 151.0 332 38.0
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 8.2e-34 148.7 323 36.5
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.4e-33 147.9 367 39.5
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.4e-33 147.9 321 37.1
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.1e-33 146.4 329 39.2
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.3e-33 146.0 329 38.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 9.1e-33 145.2 339 36.3
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.2e-32 144.8 337 38.0
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.0e-32 144.1 335 36.7
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.6e-32 143.7 330 38.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.3e-31 141.4 331 36.3
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.7e-31 141.0 328 36.9
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.7e-31 141.0 322 37.6
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 5.0e-31 139.4 200 49.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 6.5e-31 139.0 200 49.0
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 8.5e-31 138.7 348 35.9
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.2e-30 136.3 267 38.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.2e-29 134.8 207 48.8
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-29 134.4 145 57.2
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 2.1e-29 134.0 327 34.9
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.9e-29 132.1 337 37.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 7.9e-29 132.1 265 40.0
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.4e-28 131.3 326 35.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.4e-28 131.3 326 36.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.8e-28 131.0 260 40.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.8e-28 131.0 260 40.0
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 3.0e-28 130.2 200 47.5
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.1e-27 128.3 332 37.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-27 127.9 384 36.2
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.6e-27 127.1 338 34.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.4e-27 126.3 316 37.3
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.4e-27 126.3 346 36.4
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.7e-27 125.9 330 38.5
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 5.7e-27 125.9 316 37.3
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 7.4e-27 125.6 331 35.6
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 9.7e-27 125.2 229 43.2
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.2e-26 124.0 337 38.3
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.8e-26 123.6 337 38.3
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 8.2e-26 122.1 330 38.2
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 8.2e-26 122.1 317 37.5
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 8.2e-26 122.1 215 43.3
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.1e-25 121.7 336 36.9
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.8e-25 120.9 88 78.4
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.8e-25 120.9 321 37.1
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 2.4e-25 120.6 333 36.3
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 9.1e-25 118.6 344 32.8
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.6e-24 117.9 131 55.0
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 2.6e-24 117.1 344 36.9
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 7.7e-24 115.5 245 38.4
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 8.5e-23 112.1 327 33.9
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.1e-22 111.7 282 36.5
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.9e-22 110.9 318 33.6
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.5e-22 110.5 190 41.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.4e-22 108.6 226 38.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.1e-21 107.5 402 32.8
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 4.7e-21 106.3 302 33.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 8.0e-21 105.5 335 33.7
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.0e-20 103.6 72 72.2
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 4.0e-20 103.2 273 36.6
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 2.6e-19 100.5 334 33.2
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 7.5e-19 99.0 435 28.0
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 7.5e-19 99.0 339 33.3
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.3e-18 95.9 261 36.4
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-17 95.1 290 35.5
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.1e-17 93.6 320 32.8
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.0e-16 90.9 320 29.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.0e-15 86.3 271 32.5
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.1e-14 85.1 356 31.7
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.7e-11 72.8 138 37.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.7e-10 71.2 182 35.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.4e-09 68.2 286 29.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.1e-09 67.0 282 28.7
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 9.1e-09 65.5 222 28.4
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-08 64.7 295 28.5
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 7.7e-08 62.4 241 34.0
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.0e-07 62.0 237 30.8
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.2e-07 60.8 86 44.2
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.2e-07 60.8 246 27.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.0e-07 59.7 269 34.6
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.9e-06 57.8 336 28.3
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.5e-06 57.4 379 29.8


User provided reference genes

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