Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.1e-262 909.4 470 100.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 8.0e-221 770.4 482 83.8
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.4e-179 632.1 474 69.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 4.2e-177 625.2 474 70.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.2e-176 623.6 475 69.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.0e-175 620.5 479 68.1
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 3.9e-175 618.6 471 69.2
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.8e-172 609.8 474 67.3
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.1e-167 591.7 476 65.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.1e-166 590.5 476 65.8
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 8.2e-165 584.3 471 65.6
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 6.9e-164 581.3 472 64.8
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 9.0e-164 580.9 474 62.4
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 5.8e-163 578.2 474 64.3
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.7e-162 576.6 473 64.1
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.9e-162 575.1 466 65.5
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 6.0e-160 568.2 487 63.2
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.9e-159 565.5 473 63.4
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.1e-159 565.1 468 63.0
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 9.7e-158 560.8 475 61.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.3e-156 555.1 474 62.0
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.6e-155 552.7 467 61.7
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.4e-155 552.4 482 62.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 4.5e-155 552.0 471 64.1
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 3.2e-153 545.8 473 63.4
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.1e-152 543.1 469 61.4
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.1e-152 543.1 490 59.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-149 532.3 463 62.4
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 6.3e-149 531.6 467 61.0
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.3e-149 531.6 466 61.8
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 3.4e-147 525.8 462 60.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.4e-147 525.8 471 60.3
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.5e-146 521.5 468 60.5
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.2e-144 517.3 463 61.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 6.1e-144 515.0 477 58.3
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.0e-143 514.2 476 58.8
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.0e-143 514.2 463 60.9
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 6.7e-143 511.5 463 59.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.4e-142 508.1 465 60.4
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 6.3e-141 505.0 464 56.7
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 6.3e-141 505.0 467 59.1
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.5e-139 499.2 475 58.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 7.7e-139 498.0 467 58.0
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.5e-138 495.0 468 57.7
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.9e-137 493.4 468 58.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.2e-137 492.7 470 58.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 5.5e-137 491.9 467 57.2
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 9.4e-137 491.1 466 57.7
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.7e-136 489.6 467 56.7
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.6e-136 489.2 467 56.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.7e-136 488.8 467 56.7
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-135 487.3 467 56.5
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.0e-135 486.1 467 57.2
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 5.2e-135 485.3 467 55.9
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 8.8e-135 484.6 465 55.7
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.1e-132 477.6 471 57.1
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.8e-132 476.9 461 55.7
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 9.1e-132 474.6 461 55.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 9.1e-132 474.6 464 57.1
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-131 473.8 469 54.8
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.6e-131 473.0 468 56.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.0e-130 471.1 468 56.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.3e-130 470.7 468 53.8
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.2e-130 469.9 461 54.9
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.5e-129 466.5 460 55.7
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.1e-128 461.8 462 53.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 5.2e-127 458.8 461 52.9
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.4e-124 449.9 461 53.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.4e-124 449.9 464 51.1
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.4e-124 449.9 460 53.0
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.0e-122 444.5 486 51.9
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.2e-122 443.4 444 53.4
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.5e-122 441.8 444 53.2
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.7e-120 435.6 473 50.1
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.3e-119 433.3 473 49.9
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.3e-119 433.3 473 50.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 6.8e-119 431.8 470 49.8
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.4e-118 429.1 471 55.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.2e-117 426.8 453 51.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.2e-117 426.8 473 49.7
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 4.8e-117 425.6 436 51.6
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.3e-117 424.9 521 48.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-116 424.1 612 43.5
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.1e-116 422.9 414 57.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 5.4e-116 422.2 464 50.9
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.2e-115 421.0 467 50.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.2e-115 421.0 466 51.1
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.0e-115 420.2 425 53.4
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.9e-114 416.4 464 48.5
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 6.6e-114 415.2 458 48.7
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.6e-114 414.8 470 50.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 5.5e-113 412.1 469 51.2
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.2e-112 411.0 456 49.1
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 6.1e-112 408.7 462 50.0
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-111 407.9 351 62.1
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 5.2e-111 405.6 477 50.5
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.5e-110 404.1 467 47.8
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.0e-110 403.7 467 47.8
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.7e-109 400.6 476 48.5
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.4e-108 397.5 476 48.3
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.3e-106 391.0 459 47.1
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-106 389.0 446 49.3
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 4.0e-103 379.4 263 68.4
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.0e-102 377.1 473 49.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.0e-102 377.1 587 42.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.3e-101 371.7 305 63.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.3e-101 371.7 305 63.0
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.9e-100 370.5 304 62.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-99 367.5 457 44.9
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-98 363.6 365 58.4
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.5e-97 360.1 457 48.4
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.1e-96 357.1 272 61.4
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.1e-96 357.1 465 44.5
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.1e-96 357.1 460 45.2
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 4.9e-93 345.9 455 43.5
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-92 344.4 438 45.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 3.3e-89 333.2 463 42.8
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.0e-86 323.9 263 62.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.3e-85 321.2 456 41.2
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 4.3e-81 306.2 436 42.7
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.4e-76 291.2 259 58.3
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.9e-69 266.9 452 41.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.0e-62 244.2 455 34.3
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-60 238.4 435 36.3
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 6.7e-58 229.2 421 34.9
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 7.6e-46 189.1 336 39.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.3e-45 188.3 469 32.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 5.0e-45 186.4 139 69.8
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 6.5e-45 186.0 472 32.2
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.2e-44 183.7 323 38.7
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.2e-44 183.7 237 50.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 3.5e-43 180.3 257 40.5
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 3.5e-43 180.3 470 31.1
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 8.2e-40 169.1 224 45.1
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 5.3e-39 166.4 224 45.1
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 9.0e-39 165.6 218 40.4
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.2e-35 155.2 136 54.4
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-34 151.4 461 28.4
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-33 148.3 106 66.0
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-32 144.4 173 53.8
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 9.1e-31 139.0 240 42.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.5e-28 129.8 130 59.2
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 2.7e-27 127.5 170 44.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-26 125.2 190 47.4
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.1e-26 123.2 227 34.4
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.8e-24 117.5 195 33.8
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-23 112.8 132 48.5
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-23 112.8 132 48.5
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.6e-22 110.9 132 49.2
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.0e-21 109.0 99 52.5
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.5e-20 104.4 282 29.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 5.5e-20 103.2 445 26.5
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 7.2e-20 102.8 84 57.1
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 7.2e-20 102.8 455 25.1
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-17 95.1 76 67.1
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-17 94.0 80 63.8
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 7.4e-17 92.8 114 41.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-16 91.3 80 62.5
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 3.7e-16 90.5 223 30.9
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-14 85.1 73 65.8
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 1.6e-14 85.1 88 48.9
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.7e-08 65.1 111 42.3


User provided reference genes

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