Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0286751 Lupinus albus HOM05D000200 ORTHO05D010867 1.2e-74 283.1 146 100.0
Lalb_Chr20g0110011 Lupinus albus HOM05D000200 ORTHO05D001546 6.9e-46 187.6 132 76.5
Lj3g0008611 Lotus japonicus HOM05D000200 ORTHO05D001546 3.6e-34 148.7 128 66.4
VMungo1080G1650 Vigna mungo HOM05D000200 ORTHO05D001546 3.3e-32 142.1 137 62.0
Glyma.12G219400 Glycine max HOM05D000200 ORTHO05D001546 5.7e-32 141.4 131 63.4
Medtr2g081070 Medicago truncatula HOM05D000200 ORTHO05D001546 5.7e-32 141.4 130 64.6
Glyma.13G281900 Glycine max HOM05D000200 ORTHO05D001546 1.7e-31 139.8 137 62.0
Ca_01802_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.1e-30 137.1 143 57.3
Ca_30471_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.1e-30 137.1 143 57.3
Phvul.005G085900 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 1.8e-30 136.3 137 59.9
Psat5g246920 Pisum sativum HOM05D000200 ORTHO05D001546 2.0e-29 132.9 139 59.0
TPR.G32864 Trifolium pratense HOM05D000200 ORTHO05D001546 4.5e-29 131.7 129 58.1
Haze_09530 Corylus avellana HOM05D000200 ORTHO05D001546 1.1e-19 100.5 153 49.0
COL.COLO4_09481 Corchorus olitorius HOM05D000200 ORTHO05D001546 4.2e-19 98.6 157 45.9
Duzib213G0644 Durio zibethinus HOM05D000200 ORTHO05D001546 2.7e-18 95.9 158 43.0
CiPaw.12G122800 Carya illinoinensis HOM05D000200 ORTHO05D001546 1.0e-17 94.0 146 47.9
Lalb_Chr01g0006401 Lupinus albus HOM05D000200 ORTHO05D001546 1.0e-17 94.0 159 41.5
Thecc.07G071000 Theobroma cacao HOM05D000200 ORTHO05D001546 1.4e-17 93.6 172 45.3
CiPaw.11G176700 Carya illinoinensis HOM05D000200 ORTHO05D001546 1.8e-17 93.2 143 47.6
FAN21G0598 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.8e-17 93.2 151 44.4
Actinidia35280 Actinidia chinensis HOM05D000200 ORTHO05D001546 2.3e-17 92.8 142 45.8
QL08p017742 Quercus lobata HOM05D000200 ORTHO05D001546 2.3e-17 92.8 160 45.0
Lj1A853G77 Lonicera japonica HOM05D000200 ORTHO05D001546 3.0e-17 92.4 143 44.1
arahy.Tifrunner.gnm1.ann1.FHLQ2C Arachis hypogaea HOM05D000200 ORTHO05D001546 3.9e-17 92.0 185 38.4
FvH4_3g21010 Fragaria vesca HOM05D000200 ORTHO05D001546 3.9e-17 92.0 151 44.4
arahy.Tifrunner.gnm1.ann1.9FY18V Arachis hypogaea HOM05D000200 ORTHO05D001546 6.7e-17 91.3 185 39.5
FAN16G0033 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.1e-16 90.5 151 41.7
FAN25G0486 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.1e-16 90.5 151 44.4
arahy.Tifrunner.gnm1.ann1.9V79C6 Arachis hypogaea HOM05D000200 ORTHO05D001546 2.0e-16 89.7 156 42.9
arahy.Tifrunner.gnm1.ann1.WRW58P Arachis hypogaea HOM05D000200 ORTHO05D001546 2.0e-16 89.7 156 41.7
FAN11G2529 Fragaria x ananassa HOM05D000200 ORTHO05D001546 2.6e-16 89.4 151 43.7
Eucgr.F03356 Eucalyptus grandis HOM05D000200 ORTHO05D001546 4.4e-16 88.6 157 42.7
CSS0049999 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 5.7e-16 88.2 141 44.7
Prupe.4G190400 Prunus persica HOM05D000200 ORTHO05D001546 5.7e-16 88.2 150 46.0
TWI39G0397 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 5.7e-16 88.2 162 42.0
Gohir.A04G026200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 7.4e-16 87.8 148 43.2
Oeu019364.1 Olea europaea HOM05D000200 ORTHO05D001546 7.4e-16 87.8 159 41.5
TAR624G0601 Trochodendron aralioides HOM05D000200 ORTHO05D001546 1.3e-15 87.0 152 42.1
CANSAT11G1345 Cannabis sativa HOM05D000200 ORTHO05D001546 1.7e-15 86.7 162 44.4
Ah.04g165400 Amaranthus hybridus HOM05D000200 ORTHO05D001546 2.2e-15 86.3 146 43.2
Cc05_g12700 Coffea canephora HOM05D000200 ORTHO05D001546 2.2e-15 86.3 139 46.0
Gohir.A04G025900 Gossypium hirsutum HOM05D000200 ORTHO05D001546 2.2e-15 86.3 148 43.2
Actinidia18744 Actinidia chinensis HOM05D000200 ORTHO05D001546 2.8e-15 85.9 152 44.7
Potri.011G126800 Populus trichocarpa HOM05D000200 ORTHO05D001546 3.7e-15 85.5 160 41.9
Gohir.D05G361800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 6.3e-15 84.7 111 50.5
Potri.001G407000 Populus trichocarpa HOM05D000200 ORTHO05D001546 6.3e-15 84.7 161 42.2
RhsimUnG0258700 Rhododendron simsii HOM05D000200 ORTHO05D001546 6.3e-15 84.7 147 42.2
Atru.chr2.2907 Acer truncatum HOM05D000200 ORTHO05D001546 8.2e-15 84.3 156 39.1
Duzib170G0125 Durio zibethinus HOM05D000200 ORTHO05D001546 8.2e-15 84.3 159 41.5
MELO3C018189.2 Cucumis melo HOM05D000200 ORTHO05D001546 1.1e-14 84.0 143 44.1
vmacro09561 Vaccinium macrocarpon HOM05D000200 ORTHO05D001546 1.1e-14 84.0 136 44.9
Lj3g0021160 Lotus japonicus HOM05D000200 ORTHO05D001546 1.4e-14 83.6 145 42.1
A10p11570 Brassica napus HOM05D000200 ORTHO05D001546 1.8e-14 83.2 161 42.2
BraA10t43252Z Brassica rapa HOM05D000200 ORTHO05D001546 1.8e-14 83.2 161 42.2
Gohir.D01G056200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 1.8e-14 83.2 155 40.6
Gorai.002G076300 Gossypium raimondii HOM05D000200 ORTHO05D001546 1.8e-14 83.2 155 40.6
TWI38G1989 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 2.4e-14 82.8 162 42.6
Sabra16G0268400 Salix brachista HOM05D000200 ORTHO05D001546 3.1e-14 82.4 161 42.2
Gorai.009G430900 Gossypium raimondii HOM05D000200 ORTHO05D001546 5.3e-14 81.6 115 47.8
Manes.03G116600 Manihot esculenta HOM05D000200 ORTHO05D001546 5.3e-14 81.6 157 40.1
Manes.15G083100 Manihot esculenta HOM05D000200 ORTHO05D001546 5.3e-14 81.6 160 44.4
RcHm_v2.0_Chr5g0036031 Rosa chinensis HOM05D000200 ORTHO05D001546 7.0e-14 81.3 150 42.0
Sabra11G0110700 Salix brachista HOM05D000200 ORTHO05D001546 7.0e-14 81.3 152 40.8
MD03G1219000 Malus domestica HOM05D000200 ORTHO05D001546 9.1e-14 80.9 141 42.6
Medtr8g464480 Medicago truncatula HOM05D000200 ORTHO05D001546 9.1e-14 80.9 98 53.1
ClCG11G018470 Citrullus lanatus HOM05D000200 ORTHO05D001546 1.2e-13 80.5 151 41.7
Ciclev10007271m.g Citrus clementina HOM05D000200 ORTHO05D001546 1.2e-13 80.5 167 40.1
Lalb_Chr03g0030391 Lupinus albus HOM05D000200 ORTHO05D001546 1.2e-13 80.5 147 38.8
Gohir.A01G068800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 2.6e-13 79.3 155 40.0
MD11G1237000 Malus domestica HOM05D000200 ORTHO05D001546 2.6e-13 79.3 130 43.1
Glyma.06G254500 Glycine max HOM05D000200 ORTHO05D001546 4.5e-13 78.6 141 41.1
Nn1g06752 Nelumbo nucifera HOM05D000200 ORTHO05D001546 4.5e-13 78.6 125 45.6
Glyma.12G147000 Glycine max HOM05D000200 ORTHO05D001546 5.9e-13 78.2 145 41.4
Psat4g169560 Pisum sativum HOM05D000200 ORTHO05D001546 5.9e-13 78.2 107 48.6
Phvul.011G155300 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 7.7e-13 77.8 147 39.5
Ca_23011_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.0e-12 77.4 115 47.0
GSVIVG01014437001 Vitis vinifera HOM05D000200 ORTHO05D001546 1.0e-12 77.4 149 40.3
Lalb_Chr19g0134501 Lupinus albus HOM05D000200 ORTHO05D001546 1.3e-12 77.0 149 39.6
Sed0010032 Sechium edule HOM05D000200 ORTHO05D001546 1.3e-12 77.0 150 40.0
THA.LOC104799906 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 1.3e-12 77.0 161 39.8
VMungo1127G1735 Vigna mungo HOM05D000200 ORTHO05D001546 1.3e-12 77.0 145 38.6
CsaV3_3G044360 Cucumis sativus L. HOM05D000200 ORTHO05D001546 1.7e-12 76.6 143 37.8
BcaB08g35786 Brassica carinata HOM05D000200 ORTHO05D001546 2.2e-12 76.3 161 37.3
A02p10430 Brassica napus HOM05D000200 ORTHO05D001546 3.8e-12 75.5 153 37.9
Lj8A160G68 Lonicera japonica HOM05D000200 ORTHO05D001546 3.8e-12 75.5 140 43.6
Aa31LG3G10240 Aethionema arabicum HOM05D000200 ORTHO05D001546 5.0e-12 75.1 161 39.1
AL8G29610 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 5.0e-12 75.1 164 37.2
C09p44590 Brassica napus HOM05D000200 ORTHO05D001546 5.0e-12 75.1 162 37.7
TPR.G34591 Trifolium pratense HOM05D000200 ORTHO05D001546 5.0e-12 75.1 109 48.6
Sed0008404 Sechium edule HOM05D000200 ORTHO05D001546 6.5e-12 74.7 140 42.1
BcaC04g20354 Brassica carinata HOM05D000200 ORTHO05D001546 8.5e-12 74.3 165 38.2
BolC9t57332H Brassica oleracea HOM05D000200 ORTHO05D001546 8.5e-12 74.3 165 38.2
MBI02_g35901_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 8.5e-12 74.3 157 35.7
PSO210G1635 Papaver somniferum HOM05D000200 ORTHO05D001546 1.5e-11 73.6 52 73.1
PSO832G1519 Papaver somniferum HOM05D000200 ORTHO05D001546 1.5e-11 73.6 52 73.1
Hund23374 Selenicereus undatus HOM05D000200 ORTHO05D001546 1.5e-11 73.6 155 38.7
PGR031G1990 Punica granatum HOM05D000200 ORTHO05D001546 1.9e-11 73.2 113 47.8
Migut.M01858 Erythranthe guttata HOM05D000200 ORTHO05D001546 2.5e-11 72.8 143 42.7
BcaC03g14343 Brassica carinata HOM05D000200 ORTHO05D001546 4.2e-11 72.0 151 36.4
C02p17190 Brassica napus HOM05D000200 ORTHO05D001546 4.2e-11 72.0 151 36.4
BolC2t07820H Brassica oleracea HOM05D000200 ORTHO05D001546 4.2e-11 72.0 151 36.4
CARHR267570 Cardamine hirsuta HOM05D000200 ORTHO05D001546 4.2e-11 72.0 158 39.2
THA.LOC104811845 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 4.2e-11 72.0 153 35.9
EL10Ac4g08056 Beta vulgaris HOM05D000200 ORTHO05D001546 5.5e-11 71.6 167 37.1
AUR62029311 Chenopodium quinoa HOM05D000200 ORTHO05D001546 7.2e-11 71.2 128 40.6
DCAR_008700 Daucus carota HOM05D000200 ORTHO05D001546 9.4e-11 70.9 137 40.9
AT5G54280 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 1.2e-10 70.5 134 38.8
Nn1g03913 Nelumbo nucifera HOM05D000200 ORTHO05D001546 1.2e-10 70.5 167 38.3
Sp6g16320 Schrenkiella parvula HOM05D000200 ORTHO05D001546 1.2e-10 70.5 162 36.4
HPP92_016556 Vanilla planifolia HOM05D000200 ORTHO05D001546 1.2e-10 70.5 144 38.9
Carub.0008s1463 Capsella rubella HOM05D000200 ORTHO05D001546 1.6e-10 70.1 157 36.3
Solyc07g063590.4 Solanum lycopersicum HOM05D000200 ORTHO05D001546 1.6e-10 70.1 142 40.1
Sopen07g031770 Solanum pennellii HOM05D000200 ORTHO05D001546 2.7e-10 69.3 141 40.4
Sopen10g002740 Solanum pennellii HOM05D000200 ORTHO05D001546 3.6e-10 68.9 137 36.5
Aqoxy1G02794 Aquilegia oxysepala HOM05D000200 ORTHO05D001546 6.1e-10 68.2 55 61.8
DCAR_009986 Daucus carota HOM05D000200 ORTHO05D001546 6.1e-10 68.2 127 41.7
Lsat_1_v5_gn_5_6781 Lactuca sativa HOM05D000200 ORTHO05D001546 8.0e-10 67.8 141 41.1
Sc03g0009600 Simmondsia chinensis HOM05D000200 ORTHO05D001546 8.0e-10 67.8 54 64.8
CSS0024601 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 1.0e-09 67.4 138 39.9
Thhalv10012475m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 1.0e-09 67.4 164 33.5
Sc16g0006760 Simmondsia chinensis HOM05D000200 ORTHO05D001546 1.0e-09 67.4 102 42.2
BcaB05g22124 Brassica carinata HOM05D000200 ORTHO05D001546 1.4e-09 67.0 161 34.8
Nitab4.5_0001320g0070 Nicotiana tabacum HOM05D000200 ORTHO05D001546 1.4e-09 67.0 144 41.7
SGA_v2.0_scaffold73G24318 Striga asiatica HOM05D000200 ORTHO05D001546 1.4e-09 67.0 137 43.1
Aqoxy4G01409 Aquilegia oxysepala HOM05D000200 ORTHO05D001546 3.0e-09 65.9 147 35.4
Actinidia05578 Actinidia chinensis HOM05D000200 ORTHO05D010867 5.2e-09 65.1 88 46.6
Nitab4.5_0000207g0290 Nicotiana tabacum HOM05D000200 ORTHO05D001546 8.8e-09 64.3 142 38.7
Solyc10g006820.4 Solanum lycopersicum HOM05D000200 ORTHO05D001546 8.8e-09 64.3 138 36.2
PGSC0003DMG400025028 Solanum tuberosum HOM05D000200 ORTHO05D001546 8.8e-09 64.3 138 35.5
Actinidia01936 Actinidia chinensis HOM05D000200 ORTHO05D010867 1.5e-08 63.5 78 51.3
CAN.G1110.43 Capsicum annuum HOM05D000200 ORTHO05D001546 1.5e-08 63.5 138 37.7
Rhsim13G0173500 Rhododendron simsii HOM05D000200 ORTHO05D010867 1.5e-08 63.5 74 50.0
Oeu030435.1 Olea europaea HOM05D000200 ORTHO05D010867 2.0e-08 63.2 138 36.2
HanXRQChr13g0407311 Helianthus annuus HOM05D000200 ORTHO05D001546 2.6e-08 62.8 139 40.3
ECA240G4716 Erigeron canadensis HOM05D000200 ORTHO05D001546 3.3e-08 62.4 129 38.8
Migut.H01902 Erythranthe guttata HOM05D000200 ORTHO05D001546 3.3e-08 62.4 98 46.9
DCAR_022488 Daucus carota HOM05D000200 ORTHO05D010867 4.4e-08 62.0 71 50.7
Dinv40497 Davidia involucrata HOM05D000200 ORTHO05D010867 4.4e-08 62.0 136 38.2
ATR0693G008 Amborella trichopoda HOM05D000200 ORTHO05D001546 5.7e-08 61.6 123 38.2
SGA_v2.0_scaffold7G03953 Striga asiatica HOM05D000200 ORTHO05D010867 5.7e-08 61.6 46 65.2
Peaxi162Scf01216g00061 Petunia axillaris HOM05D000200 ORTHO05D001546 7.5e-08 61.2 93 46.2
Dinv39816 Davidia involucrata HOM05D000200 ORTHO05D010867 9.7e-08 60.8 135 34.8
CSS0009429 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D010867 1.3e-07 60.5 54 61.1
CAN.G162.105 Capsicum annuum HOM05D000200 ORTHO05D001546 1.3e-07 60.5 101 42.6
SGA_v2.0_scaffold77G25192 Striga asiatica HOM05D000200 ORTHO05D001546 2.2e-07 59.7 143 38.5
Peaxi162Scf00181g00068 Petunia axillaris HOM05D000200 ORTHO05D001546 3.7e-07 58.9 134 40.3
Lsat_1_v5_gn_9_95641 Lactuca sativa HOM05D000200 ORTHO05D001546 4.8e-07 58.5 133 37.6
Hma1.2p1_0144F.1_g064700 Hydrangea macrophylla HOM05D000200 ORTHO05D010867 6.3e-07 58.2 105 40.0
Hma1.2p1_1241F.1_g269825 Hydrangea macrophylla HOM05D000200 ORTHO05D010867 6.3e-07 58.2 105 40.0
Os07g0562800 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D001546 6.3e-07 58.2 59 52.5
HanXRQChr05g0151611 Helianthus annuus HOM05D000200 ORTHO05D001546 1.1e-06 57.4 39 76.9
DCAR_012726 Daucus carota HOM05D000200 ORTHO05D001546 1.4e-06 57.0 141 34.0
Nitab4.5_0000297g0130 Nicotiana tabacum HOM05D000200 ORTHO05D001546 1.8e-06 56.6 85 47.1
Nitab4.5_0012832g0020 Nicotiana tabacum HOM05D000200 ORTHO05D001546 1.8e-06 56.6 85 48.2
HPP92_012355 Vanilla planifolia HOM05D000200 ORTHO05D001546 7.0e-06 54.7 120 35.8
HanXRQChr08g0234651 Helianthus annuus HOM05D000200 ORTHO05D001546 9.1e-06 54.3 45 66.7
HanXRQChr08g0234661 Helianthus annuus HOM05D000200 ORTHO05D001546 9.1e-06 54.3 45 66.7


User provided reference genes

Program Settings