Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 0.0e+00 1124.8 567 100.0
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 1.5e-253 879.4 557 79.4
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 2.6e-250 868.6 559 78.5
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 3.5e-239 831.6 563 75.5
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.8e-235 819.3 553 75.9
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.8e-235 819.3 567 74.6
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 1.4e-227 793.1 621 67.1
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 5.5e-224 781.2 621 66.3
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 8.0e-207 724.2 493 74.8
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 1.8e-190 669.8 559 61.5
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 5.2e-190 668.3 557 62.5
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.2e-186 657.1 559 60.1
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 1.2e-183 647.1 562 60.5
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 2.1e-183 646.4 563 59.9
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 4.7e-183 645.2 562 60.0
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 6.1e-183 644.8 569 60.5
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.8e-182 643.3 566 60.2
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.0e-182 642.1 564 59.6
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 3.4e-181 639.0 588 56.8
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 4.9e-180 635.2 556 59.2
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 1.6e-178 630.2 549 59.7
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 2.7e-178 629.4 556 59.9
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 5.9e-178 628.2 559 58.3
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 8.6e-177 624.4 551 58.1
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 2.5e-176 622.9 425 75.5
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 2.8e-175 619.4 554 58.5
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.0e-174 617.5 576 55.6
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 2.3e-174 616.3 551 56.6
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 5.2e-174 615.1 538 59.3
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 8.3e-172 607.8 553 57.9
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 5.4e-171 605.1 566 55.5
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 6.0e-170 601.7 563 55.8
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.7e-169 600.1 591 54.0
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 3.0e-169 599.4 558 57.7
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 5.0e-169 598.6 550 56.5
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 1.1e-168 597.4 575 54.8
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 9.5e-168 594.3 556 57.6
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 6.2e-167 591.7 559 58.1
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 2.3e-166 589.7 565 55.0
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 3.1e-166 589.3 603 53.1
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 8.9e-166 587.8 548 55.7
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 8.9e-166 587.8 548 55.3
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 1.2e-165 587.4 551 55.9
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.5e-165 587.0 563 56.1
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 2.0e-165 586.6 554 56.7
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 8.3e-164 581.3 549 54.6
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 8.3e-164 581.3 549 55.0
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 3.2e-163 579.3 614 52.4
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 1.0e-161 574.3 552 54.2
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 5.1e-161 572.0 581 52.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 6.6e-161 571.6 556 54.9
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 2.5e-160 569.7 555 53.5
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 5.6e-160 568.5 656 48.8
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 7.3e-160 568.2 549 54.1
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 1.8e-158 563.5 568 52.8
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 8.9e-158 561.2 557 53.3
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 2.2e-156 556.6 552 53.8
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 8.3e-156 554.7 579 51.1
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 7.1e-155 551.6 574 52.4
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 3.5e-154 549.3 504 57.9
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 3.5e-154 549.3 556 50.9
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.6e-154 548.9 504 57.9
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.0e-153 547.7 581 52.0
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 6.2e-151 538.5 519 56.5
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 1.5e-149 533.9 576 51.0
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 5.6e-144 515.4 522 53.8
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 2.1e-143 513.5 563 49.9
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 2.4e-142 510.0 561 48.3
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 1.3e-140 504.2 519 52.2
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 1.9e-139 500.4 579 48.7
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 4.2e-139 499.2 520 51.5
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.5e-133 480.7 560 48.9
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 3.1e-126 456.4 502 49.4
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.9e-124 449.9 502 49.4
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 6.0e-122 442.2 376 60.6
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 6.2e-119 432.2 576 44.8
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.2e-109 401.4 554 42.1
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.4e-107 394.4 591 38.6
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.2e-101 374.8 432 46.1
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 3.4e-101 373.2 550 39.8
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.6e-98 364.4 365 51.0
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.7e-98 363.6 276 65.9
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 6.3e-95 352.4 378 51.3
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 2.4e-94 350.5 274 63.9
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 2.6e-88 330.5 439 45.1
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 3.3e-88 330.1 375 51.7
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 5.7e-88 329.3 358 51.7
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 5.2e-81 306.2 201 75.6
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.2e-77 295.0 283 53.0
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.8e-73 279.3 192 74.0
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.8e-73 279.3 192 74.0
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 4.4e-72 276.6 442 41.2
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 5.4e-70 269.6 255 56.5
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 7.0e-70 269.2 285 49.1
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.6e-56 224.2 212 56.6
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 4.3e-51 206.8 239 49.0
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 1.1e-41 175.6 181 54.1
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 4.4e-40 170.2 190 53.2
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.6e-37 161.8 215 42.8
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.6e-34 150.6 122 54.1
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.8e-33 148.3 186 46.8
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.4e-30 138.7 117 52.1
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 5.4e-30 136.7 94 62.8
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 3.9e-28 130.6 98 61.2
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 9.9e-24 115.9 144 50.7
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 1.7e-15 88.6 135 39.3
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 7.1e-14 83.2 148 37.2
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 3.3e-11 74.3 90 50.0
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 1.3e-10 72.4 324 24.7


User provided reference genes

Program Settings