Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.9e-282 974.5 480 100.0
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 5.6e-254 880.6 479 88.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.8e-253 877.5 479 88.5
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 7.6e-251 870.2 469 90.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 7.6e-251 870.2 472 89.6
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.3e-250 869.4 478 88.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 5.4e-249 864.0 478 89.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.5e-248 861.3 476 87.4
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.3e-242 842.8 476 85.7
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.1e-238 829.7 479 85.8
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 3.2e-225 785.0 477 79.9
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 9.4e-225 783.5 472 80.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.4e-223 779.6 472 80.3
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.5e-222 775.4 472 79.4
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.2e-221 772.3 472 78.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.7e-221 771.5 472 79.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.4e-220 769.6 478 78.0
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-220 768.1 478 77.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.1e-220 768.1 466 79.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-219 766.5 472 78.6
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.5e-219 766.1 474 77.4
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.0e-219 765.8 475 77.9
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-218 763.5 472 78.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-218 763.1 473 78.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-218 763.1 472 79.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.9e-218 761.9 469 79.5
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.0e-218 761.1 473 78.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 5.0e-218 761.1 473 77.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.1e-217 760.0 470 78.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.4e-217 759.6 478 77.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.9e-217 759.2 471 78.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.5e-217 757.7 474 77.4
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 7.2e-217 757.3 476 76.7
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.1e-216 755.7 482 75.9
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.3e-215 752.3 476 77.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.9e-215 751.5 475 77.1
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.4e-214 747.3 464 79.5
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.2e-213 745.7 472 75.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.4e-212 742.3 476 74.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 7.0e-212 740.7 473 76.1
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 9.1e-212 740.3 475 74.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.2e-211 740.0 471 76.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.5e-211 738.4 469 75.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 8.5e-210 733.8 478 72.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 5.5e-209 731.1 453 78.4
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.1e-208 729.2 476 75.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 4.7e-208 728.0 473 74.6
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 8.0e-208 727.2 471 72.8
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 5.2e-207 724.5 477 72.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 3.3e-206 721.8 476 73.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 5.7e-206 721.1 417 84.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.8e-205 718.8 470 73.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 8.2e-205 717.2 452 77.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.1e-204 714.9 470 73.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.0e-204 714.1 473 73.6
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 7.0e-204 714.1 474 73.0
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.0e-203 712.6 430 80.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.9e-202 708.8 471 74.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 5.5e-201 704.5 467 73.2
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.6e-200 703.0 467 73.0
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.6e-200 703.0 467 73.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.6e-200 703.0 440 77.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.1e-200 702.6 542 65.3
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.0e-200 700.7 471 72.8
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.3e-199 699.1 473 71.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.3e-199 699.1 445 75.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.8e-199 697.6 471 71.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.5e-198 696.4 470 73.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.4e-196 689.9 475 71.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 472 71.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.9e-194 682.2 482 70.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.9e-194 682.2 367 89.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.8e-194 681.8 431 77.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.1e-193 680.2 470 70.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-193 680.2 471 72.4
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.2e-193 678.7 470 69.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-192 676.4 471 72.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 8.0e-192 674.1 494 67.0
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.0e-191 673.7 472 72.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.8e-191 672.9 471 71.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.0e-191 672.2 472 71.8
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.0e-190 669.5 413 77.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.6e-190 669.1 472 71.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.6e-190 669.1 471 71.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 5.7e-190 667.9 472 71.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 7.5e-190 667.5 472 71.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.2e-189 666.0 469 71.2
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.8e-189 665.6 471 71.3
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 4.8e-189 664.8 472 71.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.1e-188 661.8 471 71.1
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.0e-188 661.0 472 68.2
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 9.1e-188 660.6 471 71.1
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.6e-187 659.8 471 71.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.7e-187 659.1 426 74.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-186 656.8 471 70.7
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.3e-186 656.8 471 70.7
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.9e-186 655.6 473 67.2
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.0e-186 654.8 466 68.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.6e-186 654.4 472 70.6
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 7.2e-185 651.0 483 68.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-184 649.8 471 70.3
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-181 639.0 515 61.6
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 4.9e-181 638.3 484 67.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 8.3e-181 637.5 473 66.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-177 627.1 527 62.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.8e-176 622.5 443 71.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 8.3e-173 610.9 482 63.1
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 5.6e-169 598.2 470 66.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.0e-168 594.3 476 66.0
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.4e-164 581.6 351 79.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.0e-159 565.5 363 76.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 8.9e-159 564.3 509 56.8
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-156 557.0 408 68.1
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.0e-154 550.8 468 62.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 7.3e-153 544.7 487 58.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.6e-152 543.5 469 59.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.6e-146 521.5 476 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 7.9e-139 498.0 470 54.0
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.4e-132 476.5 547 47.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.6e-126 456.4 467 53.3
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.0e-117 427.9 269 76.2
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 9.3e-116 421.4 329 68.7
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.0e-110 403.7 305 64.9
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.1e-108 397.9 240 81.2
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.0e-93 348.2 287 67.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.6e-91 340.9 479 42.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.5e-86 322.8 382 45.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.2e-84 316.6 203 73.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.4e-79 300.4 272 59.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-78 297.7 478 37.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.0e-73 280.8 505 37.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.8e-73 278.5 248 61.7
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.2e-66 256.1 461 37.7
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.2e-66 256.1 272 49.6
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.7e-61 241.1 457 36.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-56 224.6 174 66.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 7.8e-54 215.7 207 54.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.5e-52 210.7 288 44.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.8e-51 207.2 181 58.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 8.9e-50 202.2 198 53.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.4e-47 193.0 111 79.3
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.2e-47 192.2 111 79.3
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.0e-46 189.5 111 77.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.3e-45 188.3 202 54.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 3.9e-45 186.8 112 83.9
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.5e-41 174.9 107 76.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.7e-40 170.2 122 67.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.5e-36 158.3 111 67.6
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 4.0e-34 150.2 122 59.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 4.4e-33 146.7 92 72.8
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 7.6e-33 146.0 116 58.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-31 142.1 205 41.5
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.4e-31 141.0 72 90.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-28 130.2 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.0e-21 109.0 125 52.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.3e-16 92.0 58 75.9
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-12 79.0 62 62.9
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 5.8e-09 66.6 39 82.1
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.9e-08 63.5 43 74.4
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.1e-07 62.4 43 72.1
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-07 62.0 35 77.1
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 6.0e-06 56.6 47 63.8


User provided reference genes

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