Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 2.7e-67 258.5 125 100.0
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 8.2e-48 193.7 127 77.2
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 2.5e-44 182.2 127 73.2
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 5.4e-39 164.5 125 69.6
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.0e-38 162.5 115 73.9
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 7.7e-38 160.6 120 70.0
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 5.0e-37 157.9 104 70.2
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 8.0e-35 150.6 105 68.6
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 8.0e-35 150.6 114 68.4
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 3.0e-34 148.7 120 68.3
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 6.3e-32 141.0 114 60.5
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 2.4e-31 139.0 111 65.8
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 3.1e-31 138.7 115 60.9
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.6e-30 136.3 124 62.9
Medtr4g012490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.5e-28 129.0 123 61.0
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 2.5e-28 129.0 125 58.4
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 1.0e-26 123.6 116 59.5
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-26 122.9 124 58.9
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 8.9e-26 120.6 124 59.7
Psat7g251680 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-25 120.2 122 59.8
TPR.G39761 Trifolium pratense HOM05D003277 ORTHO05D003275 1.2e-25 120.2 125 58.4
Medtr4g012390 Medicago truncatula HOM05D003277 ORTHO05D003275 2.6e-25 119.0 114 59.6
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.6e-25 119.0 111 52.3
Medtr4g012350 Medicago truncatula HOM05D003277 ORTHO05D003275 5.8e-25 117.9 114 61.4
Psat7g251560 Pisum sativum HOM05D003277 ORTHO05D003275 9.8e-25 117.1 122 57.4
Psat7g251640 Pisum sativum HOM05D003277 ORTHO05D003275 1.1e-23 113.6 122 57.4
Psat7g251720 Pisum sativum HOM05D003277 ORTHO05D003275 1.1e-23 113.6 122 55.7
Psat7g251760 Pisum sativum HOM05D003277 ORTHO05D003275 1.9e-23 112.8 124 56.5
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.1e-20 103.6 63 76.2
Medtr4g012330 Medicago truncatula HOM05D003277 ORTHO05D003275 1.2e-19 100.1 124 54.0
arahy.Tifrunner.gnm1.ann1.9450TA Arachis hypogaea HOM05D003277 ORTHO05D003275 8.0e-19 97.4 147 45.6
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.1e-18 97.1 94 54.3
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 2.3e-18 95.9 130 48.5
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.5e-17 93.2 95 52.6
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 2.0e-17 92.8 97 56.7
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 4.9e-16 88.2 88 52.3
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 6.4e-16 87.8 115 44.3
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 2.4e-15 85.9 90 48.9
Lalb_Chr04g0262691 Lupinus albus HOM05D003277 ORTHO05D003275 9.2e-15 84.0 60 65.0
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 1.6e-14 83.2 113 41.6
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 3.5e-14 82.0 113 40.7
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 4.6e-14 81.6 79 53.2
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.8e-14 80.9 94 47.9
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 1.0e-13 80.5 78 55.1
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.3e-13 80.1 114 45.6
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.3e-13 80.1 114 42.1
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.3e-13 80.1 87 48.3
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.3e-13 80.1 87 48.3
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.3e-13 80.1 71 57.7
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.3e-13 80.1 94 46.8
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.3e-13 80.1 94 46.8
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 1.7e-13 79.7 106 48.1
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.0e-13 79.0 67 58.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.0e-13 79.0 94 45.7
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 3.9e-13 78.6 93 47.3
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.6e-13 77.8 87 47.1
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 6.6e-13 77.8 91 45.1
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.1e-12 77.0 68 54.4
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.1e-12 77.0 81 50.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.1e-12 77.0 68 54.4
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-12 76.6 66 59.1
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-12 76.6 66 59.1
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.9e-12 76.3 68 54.4
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-12 76.3 115 44.3
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.5e-12 75.9 105 45.7
Lalb_Chr25g0279751 Lupinus albus HOM05D003277 ORTHO05D003275 3.3e-12 75.5 54 63.0
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 3.3e-12 75.5 94 45.7
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 3.3e-12 75.5 94 45.7
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 7.3e-12 74.3 67 55.2
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.2e-11 73.6 86 46.5
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 1.6e-11 73.2 78 50.0
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.6e-11 73.2 66 56.1
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.6e-11 73.2 80 48.8
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.1e-11 72.8 98 43.9
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.6e-11 72.0 70 52.9
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.7e-11 71.6 73 52.1
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 4.7e-11 71.6 70 55.7
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.7e-11 71.6 63 57.1
Lalb_Chr25g0279761 Lupinus albus HOM05D003277 ORTHO05D003275 6.2e-11 71.2 56 55.4
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 8.1e-11 70.9 103 40.8
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.4e-10 70.1 66 54.5
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.4e-10 70.1 97 43.3
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.4e-10 70.1 66 57.6
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.8e-10 69.7 73 50.7
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 1.8e-10 69.7 105 41.9
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-10 69.7 70 52.9
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.1e-10 68.9 85 45.9
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 3.1e-10 68.9 91 44.0
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 5.2e-10 68.2 92 44.6
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.8e-10 67.8 69 50.7
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 8.9e-10 67.4 95 42.1
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.2e-09 67.0 69 55.1
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.5e-09 66.6 86 44.2
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.6e-09 65.9 61 54.1
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 2.6e-09 65.9 87 42.5
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 4.4e-09 65.1 95 42.1
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.4e-09 65.1 57 54.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.4e-09 65.1 73 52.1
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 4.4e-09 65.1 96 43.8
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 4.4e-09 65.1 72 47.2
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 4.4e-09 65.1 67 49.3
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 5.8e-09 64.7 70 45.7
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 5.8e-09 64.7 64 48.4
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 7.5e-09 64.3 73 50.7
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 9.9e-09 63.9 69 50.7
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 9.9e-09 63.9 80 47.5
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 9.9e-09 63.9 80 47.5
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.9e-09 63.9 57 52.6
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 9.9e-09 63.9 57 52.6
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.3e-08 63.5 107 42.1
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.7e-08 63.2 72 47.2
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.2e-08 62.8 83 42.2
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.9e-08 62.4 80 46.2
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.9e-08 62.4 70 48.6
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.9e-08 62.4 67 47.8
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.9e-08 62.4 58 58.6
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 3.7e-08 62.0 65 49.2
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.7e-08 62.0 68 50.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.9e-08 61.6 66 51.5
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 4.9e-08 61.6 83 42.2
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 4.9e-08 61.6 67 50.7
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 4.9e-08 61.6 72 48.6
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 6.4e-08 61.2 83 39.8
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.3e-08 60.8 68 50.0
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.1e-07 60.5 79 48.1
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-07 60.5 76 43.4
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.1e-07 60.5 68 50.0
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.1e-07 60.5 76 43.4
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 1.4e-07 60.1 79 46.8
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.4e-07 60.1 61 50.8
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.4e-07 60.1 80 45.0
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-07 60.1 76 43.4
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-07 60.1 71 49.3
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-07 60.1 68 44.1
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.9e-07 59.7 73 43.8
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.2e-07 58.9 61 49.2
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.2e-07 58.9 62 53.2
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 3.2e-07 58.9 69 43.5
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 4.1e-07 58.5 65 49.2
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 4.1e-07 58.5 68 45.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.1e-07 58.5 72 41.7
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.1e-07 58.5 79 44.3
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.4e-07 58.2 62 53.2
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 5.4e-07 58.2 72 41.7
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.4e-07 58.2 72 41.7
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.4e-07 58.2 72 41.7
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 5.4e-07 58.2 72 48.6
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 5.4e-07 58.2 72 48.6
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.1e-07 57.8 59 52.5
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 7.1e-07 57.8 76 46.1
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 9.2e-07 57.4 62 50.0
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 9.2e-07 57.4 68 41.2
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 9.2e-07 57.4 76 46.1
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 9.2e-07 57.4 71 47.9
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 1.2e-06 57.0 59 50.8
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.6e-06 56.6 68 45.6
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 2.1e-06 56.2 47 61.7
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.7e-06 55.8 69 43.5
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.7e-06 55.8 69 47.8
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.5e-06 55.5 72 45.8
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 3.5e-06 55.5 89 40.4
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.5e-06 55.5 70 44.3
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 3.5e-06 55.5 77 44.2
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 6.0e-06 54.7 69 43.5
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 7.8e-06 54.3 57 47.4


User provided reference genes

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