Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.4e-60 236.1 118 100.0
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-39 165.2 114 73.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.0e-31 140.2 105 64.8
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.9e-31 138.3 105 63.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 5.1e-31 137.9 122 61.5
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.5e-30 136.3 105 63.8
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.9e-30 136.0 93 68.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.9e-30 136.0 119 59.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 4.3e-30 134.8 115 59.1
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 4.3e-30 134.8 115 59.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 9.6e-30 133.7 109 65.1
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.1e-29 132.5 90 66.7
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.4e-28 129.8 112 62.5
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.4e-28 129.0 110 60.9
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.1e-28 128.6 111 61.3
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 4.0e-28 128.3 110 60.0
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 4.0e-28 128.3 99 60.6
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.0e-28 128.3 94 67.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 8.9e-28 127.1 95 64.2
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 8.9e-28 127.1 95 64.2
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-27 126.7 90 66.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.2e-27 126.7 90 66.7
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.5e-27 126.3 114 58.8
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-27 126.3 114 56.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-27 126.3 114 56.1
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.0e-27 125.9 77 75.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.0e-27 125.9 92 64.1
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.6e-27 125.6 95 63.2
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.4e-27 124.8 113 55.8
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.6e-27 124.0 113 56.6
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.7e-26 122.9 80 70.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.2e-26 122.5 77 71.4
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.2e-26 122.5 103 62.1
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.9e-26 122.1 80 68.8
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.9e-26 122.1 121 53.7
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.8e-26 121.7 92 64.1
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 6.4e-26 120.9 113 57.5
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 6.4e-26 120.9 83 68.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 8.4e-26 120.6 80 68.8
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.1e-25 120.2 122 50.0
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.4e-25 119.8 77 68.8
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.4e-25 119.8 86 64.0
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.4e-25 119.8 93 64.5
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.4e-25 119.8 80 66.2
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.9e-25 119.4 77 68.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.4e-25 119.0 115 53.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-25 118.2 80 66.2
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.2e-25 118.2 80 66.2
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 5.4e-25 117.9 99 60.6
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.1e-25 117.5 85 62.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 9.3e-25 117.1 85 62.4
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 9.3e-25 117.1 77 67.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.6e-24 116.3 114 56.1
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.1e-24 115.9 80 66.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-24 115.9 77 67.5
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-24 115.9 77 67.5
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.7e-24 115.5 77 71.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.7e-24 115.5 119 55.5
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 4.6e-24 114.8 77 66.2
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 4.6e-24 114.8 77 66.2
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.6e-24 114.8 78 70.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.6e-24 114.8 88 63.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.0e-24 114.4 86 60.5
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 7.8e-24 114.0 79 63.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 7.8e-24 114.0 115 53.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 7.8e-24 114.0 121 50.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-23 113.6 77 66.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.0e-23 113.6 103 58.3
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.3e-23 113.2 79 62.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.3e-23 113.2 105 54.3
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.7e-23 112.8 87 63.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.7e-23 112.8 121 51.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-23 111.7 79 62.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.1e-23 111.3 77 68.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 6.6e-23 110.9 74 66.2
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.1e-22 110.2 99 59.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-22 109.8 94 58.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.3e-22 108.6 121 49.6
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.3e-22 108.6 121 49.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 4.3e-22 108.2 131 48.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 7.3e-22 107.5 76 67.1
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 7.3e-22 107.5 77 67.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-21 106.7 80 58.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-21 106.7 80 58.8
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-21 106.7 80 58.8
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.3e-21 106.7 80 58.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-21 106.7 80 58.8
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.1e-21 105.9 76 63.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.1e-21 105.9 76 63.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.1e-21 105.9 76 63.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-21 105.5 80 58.8
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.8e-21 105.5 77 64.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.8e-21 105.5 77 64.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.8e-21 105.5 83 59.0
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.8e-21 104.8 79 64.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 6.2e-21 104.4 76 67.1
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.2e-21 104.4 78 64.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.2e-21 104.4 75 66.7
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.1e-21 104.0 107 53.3
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.4e-20 103.2 80 62.5
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.4e-20 102.4 90 57.8
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-20 102.4 109 52.3
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 2.4e-20 102.4 77 62.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.1e-20 102.1 86 60.5
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.1e-20 102.1 80 57.5
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 4.0e-20 101.7 77 62.3
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.0e-20 101.7 111 51.4
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 9.0e-20 100.5 77 62.3
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-19 100.1 110 49.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-19 100.1 110 49.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.2e-19 100.1 97 55.7
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.5e-19 99.8 79 60.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-19 99.4 80 56.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.6e-19 99.0 77 61.0
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.4e-19 98.6 76 61.8
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-19 98.6 110 49.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.4e-19 98.6 110 48.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 4.5e-19 98.2 89 55.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.5e-19 98.2 73 63.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.6e-19 97.4 77 61.0
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.6e-19 97.4 76 60.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.6e-19 97.4 120 44.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 7.6e-19 97.4 120 44.2
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 9.9e-19 97.1 114 52.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-18 96.7 110 47.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-18 96.7 108 48.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.3e-18 96.7 94 56.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.3e-18 96.7 81 59.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.2e-18 95.9 76 57.9
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.2e-18 95.9 122 43.4
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.9e-18 95.5 75 60.0
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.9e-18 95.5 77 61.0
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 6.4e-18 94.4 125 43.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 6.4e-18 94.4 77 55.8
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 8.4e-18 94.0 74 58.1
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 8.4e-18 94.0 74 60.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-17 93.2 110 45.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.2e-17 92.0 76 61.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 4.2e-17 91.7 110 45.5
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-16 90.1 103 46.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.6e-16 89.7 106 45.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.7e-16 89.0 59 66.1
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.5e-16 88.6 90 45.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.3e-15 85.9 61 68.9
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.0e-15 85.5 53 69.8
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-14 83.6 115 43.5
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-14 83.6 83 49.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.3e-14 81.6 90 50.0
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.5e-11 73.2 47 76.6
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.8e-11 71.2 93 45.2
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 9.9e-11 70.5 75 53.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.9e-10 68.9 63 52.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-09 65.9 72 50.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.2e-09 65.1 39 79.5
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 8.7e-07 57.4 42 59.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.9e-06 56.2 78 35.9
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 7.4e-06 54.3 38 55.3


User provided reference genes

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