Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.6e-100 368.2 183 100.0
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 7.0e-88 327.4 181 89.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-87 326.6 183 88.0
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 8.6e-86 320.5 183 88.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.5e-85 319.7 183 86.9
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 7.2e-85 317.4 183 87.4
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 9.5e-85 317.0 179 87.2
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 9.5e-85 317.0 183 87.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 84.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.2e-84 316.6 183 85.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.6e-84 316.2 183 85.8
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 4.7e-84 314.7 183 86.3
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 8.0e-84 313.9 183 86.3
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.3e-83 312.4 181 84.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-83 312.4 181 84.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.3e-83 312.4 180 85.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 85.1
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 4.0e-83 311.6 181 84.0
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 4.0e-83 311.6 181 83.4
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.2e-83 311.2 181 83.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 6.8e-83 310.8 181 84.0
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 6.8e-83 310.8 181 84.0
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 6.8e-83 310.8 181 85.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.9e-83 310.5 181 83.4
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 8.9e-83 310.5 181 83.4
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 8.9e-83 310.5 181 83.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 8.9e-83 310.5 181 84.0
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.2e-82 310.1 181 83.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 81.8
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.5e-82 309.7 181 84.0
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.6e-82 308.9 181 82.9
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.4e-82 308.5 181 82.9
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 4.4e-82 308.1 181 83.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 4.4e-82 308.1 181 82.9
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 83.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.5e-82 307.4 181 82.3
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 82.3
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 82.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 82.3
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 82.3
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 84.0
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 4.9e-81 304.7 178 81.5
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.9e-81 304.7 181 81.8
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 8.3e-81 303.9 181 81.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.4e-80 302.4 170 87.1
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 80.7
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 7.0e-80 300.8 179 81.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.0e-80 300.8 181 80.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 9.2e-80 300.4 181 82.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 9.2e-80 300.4 181 77.9
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 77.9
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 80.1
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 80.8
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 79.6
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 2.7e-79 298.9 181 78.5
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 4.5e-79 298.1 178 80.3
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.5e-79 298.1 181 80.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.5e-79 298.1 181 82.3
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-78 296.6 181 79.6
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-78 296.6 181 79.6
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 2.9e-78 295.4 178 80.3
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.8e-78 295.0 203 72.9
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.8e-78 295.0 179 81.6
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.0e-78 294.7 178 80.3
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.0e-78 294.7 178 80.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 6.6e-78 294.3 181 78.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 6.6e-78 294.3 179 81.0
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.6e-78 293.9 169 84.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-77 293.5 178 79.2
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.5e-77 293.1 178 80.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.5e-77 293.1 178 79.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.9e-77 292.7 178 79.8
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.9e-77 292.7 178 79.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.9e-77 292.7 169 83.4
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 80.2
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.9e-77 292.7 181 79.0
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.3e-77 292.0 178 78.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.3e-77 292.0 169 84.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 4.3e-77 291.6 179 79.3
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 5.6e-77 291.2 178 78.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 5.6e-77 291.2 179 79.3
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 7.3e-77 290.8 178 78.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 7.3e-77 290.8 178 78.7
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 179 78.2
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.6e-76 289.7 181 80.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-76 289.3 172 81.4
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.1e-76 289.3 178 77.5
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-76 288.9 179 78.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 3.6e-76 288.5 179 78.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.1e-76 287.7 179 78.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.1e-76 287.7 179 78.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 6.1e-76 287.7 168 79.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 6.1e-76 287.7 178 78.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.0e-75 287.0 181 78.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.0e-75 285.4 168 79.2
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.0e-75 285.0 175 80.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 6.8e-75 284.3 181 76.8
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 6.8e-75 284.3 166 80.1
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 6.8e-75 284.3 202 72.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 8.9e-75 283.9 181 77.3
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 8.9e-75 283.9 170 80.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.2e-74 283.5 172 79.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.4e-74 281.6 179 79.3
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 5.8e-74 281.2 181 76.2
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 7.5e-74 280.8 179 77.1
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 7.5e-74 280.8 179 78.8
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.9e-73 278.1 184 76.6
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.9e-73 278.1 184 76.6
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 4.9e-73 278.1 171 78.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.2e-72 275.4 181 72.4
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.1e-72 275.0 171 77.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.0e-72 274.2 158 83.5
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 9.2e-72 273.9 170 77.1
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.6e-71 273.1 171 77.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 6.0e-71 271.2 170 78.2
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.7e-70 269.6 178 75.8
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 8.6e-70 267.3 178 72.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.1e-69 266.9 181 73.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.5e-69 265.8 178 75.3
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.3e-69 265.4 170 75.9
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.6e-68 263.1 179 72.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.6e-68 263.1 170 75.3
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-67 260.4 260 55.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 3.1e-67 258.8 170 75.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.4e-66 255.4 182 68.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 9.8e-66 253.8 170 69.4
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.7e-65 253.1 152 81.6
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.4e-64 250.0 181 66.9
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 7.8e-63 244.2 153 78.4
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.0e-62 242.3 169 68.6
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.5e-58 229.9 181 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.6e-58 229.2 172 62.8
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.7e-57 226.5 173 61.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 6.4e-57 224.6 182 59.9
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-47 193.4 127 74.8
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 6.6e-46 188.0 166 53.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.4e-40 170.2 102 83.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.2e-40 169.1 174 52.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.9e-35 151.4 104 75.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.0e-34 149.8 118 65.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.5e-31 139.0 80 82.5
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.1e-29 134.0 179 41.3
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.5e-29 132.9 169 39.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.6e-26 122.9 76 78.9
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.6e-26 122.9 76 78.9
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-24 117.5 67 80.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.0e-22 110.9 210 40.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-21 106.3 57 84.2
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 4.3e-21 105.5 100 57.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.8e-20 102.8 54 88.9
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.0e-18 96.7 166 35.5
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.7e-17 93.6 83 57.8
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.6e-15 87.0 143 36.4
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 6.0e-15 85.1 90 52.2
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.3e-14 83.2 64 65.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.6e-12 77.0 88 52.3
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 4.1e-11 72.4 49 69.4
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.1e-11 72.4 37 91.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.6e-10 69.7 51 68.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.5e-10 68.9 38 89.5
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 5.0e-09 65.5 64 54.7
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 8.5e-09 64.7 50 70.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 9.4e-08 61.2 55 58.2
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 4.6e-07 58.9 40 70.0
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 4.6e-07 58.9 40 70.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.8e-06 57.0 33 78.8


User provided reference genes

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