Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 5.4e-103 377.9 218 100.0
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.6e-99 366.3 218 96.3
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.1e-47 194.1 170 62.4
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.5e-47 191.8 213 53.5
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 3.3e-44 182.6 153 64.1
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 5.7e-44 181.8 153 64.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 6.9e-42 174.9 150 62.0
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 6.9e-42 174.9 149 63.8
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-39 167.5 164 54.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 4.2e-39 165.6 150 60.0
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 7.2e-39 164.9 223 47.5
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 3.6e-38 162.5 151 60.3
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.0e-37 161.0 162 51.2
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.8e-37 160.2 162 49.4
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 3.0e-37 159.5 154 53.9
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 3.0e-37 159.5 225 47.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 5.1e-37 158.7 221 47.1
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 7.4e-36 154.8 151 55.6
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 7.4e-36 154.8 150 53.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.3e-35 154.1 168 49.4
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.6e-35 153.7 204 43.6
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.2e-35 153.3 160 51.9
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.7e-35 152.5 157 49.7
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.8e-35 152.1 162 46.9
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 6.3e-35 151.8 150 52.0
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 6.3e-35 151.8 164 51.8
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.1e-34 149.4 156 51.3
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.3e-34 148.7 162 46.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 2.6e-33 146.4 154 50.0
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 5.9e-33 145.2 162 50.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.0e-32 144.4 159 49.7
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.7e-32 143.7 170 48.2
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.7e-32 143.7 159 49.1
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.8e-32 142.5 205 46.8
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 5.0e-32 142.1 205 46.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 8.5e-32 141.4 169 46.2
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.1e-31 141.0 160 47.5
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.1e-31 141.0 159 47.2
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.1e-31 141.0 159 46.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.4e-31 140.6 155 49.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.5e-31 139.8 160 47.5
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.5e-31 139.8 162 49.4
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.2e-31 139.4 154 46.1
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 5.5e-31 138.7 162 45.7
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 7.2e-31 138.3 158 44.3
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 9.4e-31 137.9 160 46.9
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-30 137.5 180 42.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-30 136.3 149 49.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.6e-30 135.6 156 44.9
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 6.1e-30 135.2 160 45.0
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 6.1e-30 135.2 158 45.6
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 7.9e-30 134.8 151 47.0
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 7.9e-30 134.8 165 45.5
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-29 134.4 149 49.0
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-29 134.0 160 46.2
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 2.3e-29 133.3 154 43.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.3e-29 133.3 168 45.2
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 2.3e-29 133.3 150 46.7
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 2.3e-29 133.3 157 49.7
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.9e-29 132.5 149 49.0
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.1e-29 132.1 149 48.3
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.1e-29 132.1 149 49.0
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.7e-29 131.7 173 43.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 8.8e-29 131.3 152 46.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.1e-28 131.0 166 44.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.5e-28 130.6 161 44.7
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.5e-28 130.6 161 44.7
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.0e-28 130.2 153 45.8
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.0e-28 130.2 157 43.3
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.6e-28 129.8 162 43.8
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 4.4e-28 129.0 153 43.1
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.7e-28 128.6 162 42.6
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 9.7e-28 127.9 152 45.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.3e-27 127.5 163 42.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.3e-27 127.5 159 44.7
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.8e-27 126.3 139 45.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.7e-27 125.9 162 40.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 6.3e-27 125.2 161 41.0
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 8.2e-27 124.8 155 41.9
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.4e-26 124.0 161 42.2
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.8e-26 123.6 158 44.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 3.1e-26 122.9 157 41.4
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 4.1e-26 122.5 154 44.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 5.3e-26 122.1 157 41.4
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 6.9e-26 121.7 165 38.8
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.2e-25 120.9 167 43.7
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-25 120.9 165 41.8
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.2e-25 120.9 170 40.0
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 4.5e-25 119.0 166 40.4
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 5.9e-25 118.6 170 37.6
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 5.9e-25 118.6 170 37.6
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.3e-24 117.5 150 45.3
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 6.5e-24 115.2 154 39.0
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.4e-23 114.0 167 40.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.9e-23 113.6 136 44.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.5e-23 113.2 157 42.0
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 4.2e-23 112.5 151 43.7
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 4.2e-23 112.5 164 36.6
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 7.2e-23 111.7 163 38.7
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-22 110.9 156 40.4
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-22 110.5 155 41.3
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.7e-22 109.8 155 39.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.7e-22 109.8 162 37.7
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-21 107.8 165 38.2
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.8e-21 107.1 164 38.4
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 6.7e-21 105.1 147 38.8
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-20 104.4 147 44.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.5e-20 104.0 165 40.0
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 5.7e-20 102.1 152 40.1
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 4.8e-19 99.0 163 38.0
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 6.3e-19 98.6 169 37.3
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 8.2e-19 98.2 205 33.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.2e-17 94.4 204 31.9
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.6e-17 94.0 148 36.5
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.0e-17 93.6 148 36.5
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.8e-16 89.4 149 35.6
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 8.5e-16 88.2 149 36.9
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.5e-15 86.7 136 36.0
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.2e-15 86.3 137 35.8
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.2e-15 85.9 119 42.0
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-14 84.0 119 41.2
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.0e-14 81.6 182 32.4
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-13 80.5 67 56.7
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-13 80.5 67 56.7
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.8e-13 80.5 188 26.6
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 4.0e-13 79.3 149 31.5
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.7e-11 73.9 114 39.5
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-11 73.6 163 31.9
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-11 73.6 163 31.9
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.8e-11 72.4 103 40.8
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.2e-11 71.6 63 55.6
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.1e-10 69.7 122 35.2
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.2e-09 67.8 66 54.5
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 4.5e-09 65.9 76 43.4
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.7e-09 65.1 49 55.1
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 2.2e-08 63.5 119 30.3
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 1.9e-07 60.5 168 28.6
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.2e-07 58.5 103 31.1
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 1.2e-06 57.8 100 35.0


User provided reference genes

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