Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1684.8 861 100.0
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1372.8 864 80.9
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1371.3 857 81.1
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1370.5 862 80.7
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1358.6 862 81.2
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1348.2 862 81.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1328.9 863 78.7
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1323.1 862 79.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1320.4 863 78.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1308.1 860 78.6
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1303.1 864 78.0
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1294.3 865 76.4
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1234.9 866 73.0
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1196.8 865 70.8
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1172.9 868 69.7
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1169.5 867 69.9
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1154.4 867 69.9
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1152.5 868 69.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1152.5 867 69.3
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1152.5 868 69.0
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1152.1 868 69.2
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1149.0 868 69.7
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1149.0 869 68.1
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1144.0 868 69.2
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1144.0 868 69.2
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1141.3 870 68.6
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1140.9 869 68.6
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1135.6 868 69.1
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1134.0 869 68.9
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 0.0e+00 1134.0 750 78.7
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1130.2 867 68.5
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1127.5 877 67.3
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1125.9 834 69.3
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1116.7 871 67.4
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1116.3 868 68.4
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1114.8 868 68.1
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1112.1 868 67.9
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1108.2 868 67.7
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1093.2 824 68.1
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1091.6 867 66.2
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 868 65.6
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1085.5 867 65.6
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1079.7 867 65.5
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1078.5 866 65.2
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1076.6 868 64.7
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 5.9e-312 1073.5 875 64.8
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 1.2e-311 1072.8 882 65.4
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 2.9e-311 1071.6 868 64.9
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 8.8e-311 1070.1 869 65.7
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 4.5e-310 1067.8 868 64.6
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 1.9e-308 1062.4 857 65.3
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.2e-307 1059.7 876 64.7
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 6.0e-307 1057.4 851 65.1
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 3.3e-305 1051.6 861 63.8
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 7.4e-305 1050.4 866 63.0
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.2e-302 1043.1 868 63.8
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.3e-301 1039.6 873 63.9
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 868 64.6
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 8.4e-301 1036.9 873 63.9
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 3.2e-300 1035.0 867 63.1
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 4.2e-300 1034.6 868 63.0
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 6.0e-299 1030.8 867 62.3
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.9e-298 1028.1 868 63.0
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 6.7e-298 1027.3 866 62.7
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 7.4e-297 1023.8 867 61.7
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 9.6e-297 1023.5 870 62.8
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 4.8e-296 1021.1 869 62.0
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 8.2e-296 1020.4 868 62.3
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.0e-293 1013.4 869 61.8
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.7e-293 1012.7 851 62.9
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 7.9e-291 1003.8 867 60.8
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 3.0e-290 1001.9 867 60.8
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.9e-290 1001.5 869 60.4
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 2.5e-289 998.8 871 61.2
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 5.7e-289 997.7 912 59.5
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 5.7e-289 997.7 875 60.9
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 5.3e-287 991.1 877 59.3
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 2.6e-286 988.8 867 61.8
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 1.3e-280 969.9 805 62.9
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 9.1e-279 963.8 845 60.0
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 5.0e-277 958.0 805 63.6
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 6.5e-277 957.6 859 58.9
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 5.5e-276 954.5 647 76.4
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 4.4e-273 944.9 827 60.8
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 7.4e-273 944.1 805 63.9
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.5e-265 919.8 753 65.6
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.8e-264 914.8 847 57.9
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.8e-263 912.9 867 56.5
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 6.1e-259 897.9 805 59.5
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 3.6e-251 872.1 867 54.4
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 4.0e-250 868.6 853 56.5
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 6.8e-250 867.8 869 53.2
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 2.5e-244 849.4 871 52.1
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 2.5e-244 849.4 867 53.1
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 5.0e-237 825.1 857 53.4
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 4.1e-231 805.4 810 54.8
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 1.8e-218 763.5 691 60.8
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 4.9e-200 702.2 753 50.1
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 5.3e-178 629.0 523 63.1
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 4.6e-166 589.3 735 47.9
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.0e-144 518.5 873 37.1
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 8.5e-144 515.4 428 61.4
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 9.1e-138 495.4 843 37.6
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 3.1e-130 470.3 849 36.9
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.5e-103 381.7 995 31.4
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 9.9e-100 369.0 325 58.8
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.5e-55 221.5 189 62.4
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 1.8e-29 135.6 100 71.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.3e-27 129.4 88 69.3
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 7.5e-23 113.6 735 23.3
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.0e-19 103.2 903 20.5
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 3.2e-18 98.2 65 70.8
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.0e-16 93.2 64 68.8
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.8e-16 92.4 57 77.2
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 4.0e-16 91.3 66 68.2
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.3e-14 86.3 57 70.2
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.7e-14 85.9 88 56.8
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.7e-14 85.9 57 71.9
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 8.3e-14 83.6 63 60.3
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.0e-08 66.6 43 74.4
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 2.3e-08 65.5 623 20.9
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 1.2e-07 63.2 101 45.5
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 2.6e-07 62.0 46 63.0
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 4.9e-06 57.8 44 54.5


User provided reference genes

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