Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.9e-157 559.3 314 100.0
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.3e-102 376.3 308 71.1
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.6e-70 268.5 320 56.2
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 8.6e-70 268.1 325 57.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 8.6e-70 268.1 320 56.2
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 3.3e-69 266.2 265 62.6
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 5.6e-69 265.4 318 56.9
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 2.1e-68 263.5 325 56.0
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 6.2e-68 261.9 249 62.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.4e-67 260.8 323 55.1
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 5.4e-64 248.8 318 54.1
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.6e-60 237.3 327 52.3
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.2e-60 235.3 273 54.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.4e-59 234.2 328 52.4
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.4e-59 234.2 328 52.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.0e-58 230.3 264 54.9
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.8e-57 226.1 275 52.7
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.2e-56 223.0 265 55.1
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 4.2e-56 222.6 330 52.4
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 5.4e-56 222.2 322 48.4
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 7.1e-56 221.9 264 53.4
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.2e-55 221.1 274 51.8
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.7e-55 219.9 275 52.0
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.6e-55 219.2 275 51.6
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 4.6e-55 219.2 305 52.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 6.0e-55 218.8 327 49.2
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.7e-54 217.2 327 48.9
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 5.1e-54 215.7 259 52.1
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.6e-54 215.3 313 47.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.1e-53 214.5 345 48.1
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.9e-53 213.8 318 48.7
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.3e-53 213.0 267 53.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.3e-53 213.0 333 47.7
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 4.3e-53 212.6 328 48.2
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 4.8e-52 209.1 276 50.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.1e-51 208.0 315 47.6
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.4e-51 207.6 258 52.3
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 3.1e-51 206.5 314 45.5
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 5.3e-51 205.7 314 47.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.5e-50 202.6 272 52.6
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 5.8e-50 202.2 260 50.8
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.9e-50 201.4 316 49.1
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.9e-49 199.9 263 50.2
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 4.9e-49 199.1 283 51.6
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.9e-48 197.2 264 50.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 2.4e-48 196.8 259 52.1
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 7.1e-48 195.3 254 49.2
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 3.5e-47 193.0 269 47.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.5e-47 193.0 328 46.0
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.3e-46 190.3 277 53.1
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.0e-46 189.9 323 44.0
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 3.9e-46 189.5 318 51.9
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 7.4e-45 185.3 342 48.5
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-44 184.1 263 49.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.6e-44 184.1 304 48.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 4.8e-44 182.6 321 45.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 4.8e-44 182.6 327 46.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-43 180.6 308 43.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.1e-43 179.9 332 44.3
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.1e-43 179.9 327 43.4
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.1e-43 179.9 263 49.0
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 6.9e-43 178.7 253 48.6
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.2e-42 177.9 327 43.4
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.0e-42 177.2 322 43.8
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.4e-42 176.4 253 49.0
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.8e-42 175.6 270 46.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.9e-41 173.3 340 41.8
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 4.9e-41 172.6 266 48.5
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.6e-39 167.5 316 41.8
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.1e-39 167.2 274 46.7
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.5e-39 166.4 307 42.3
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.0e-38 164.9 307 42.3
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-38 164.5 307 42.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.9e-38 162.9 255 45.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 6.7e-38 162.2 269 46.8
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.7e-38 162.2 318 41.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.7e-38 161.8 318 41.8
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.5e-37 161.0 248 46.4
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.3e-37 159.8 254 45.3
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 5.7e-37 159.1 241 46.9
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.7e-37 159.1 270 43.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-36 157.9 242 45.5
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 2.8e-36 156.8 265 44.9
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 3.7e-36 156.4 249 45.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.1e-35 154.8 324 40.4
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.1e-35 154.8 256 45.7
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 3.1e-35 153.3 261 45.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.9e-33 146.7 273 41.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.5e-33 145.2 247 40.9
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 2.5e-32 143.7 279 44.1
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 3.2e-32 143.3 270 42.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 4.2e-32 142.9 248 44.0
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 7.9e-31 138.7 288 39.9
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.9e-31 138.7 260 40.0
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 3.0e-30 136.7 283 39.6
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 3.9e-30 136.3 288 39.9
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.1e-29 134.8 263 39.9
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.9e-29 134.0 252 41.3
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.9e-29 134.0 303 37.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 3.3e-29 133.3 258 44.2
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.3e-29 132.9 242 40.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 9.7e-29 131.7 248 42.3
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-28 131.3 201 46.8
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.6e-28 131.0 122 59.8
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.2e-28 130.6 244 43.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.8e-28 130.2 289 38.8
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 4.8e-28 129.4 259 38.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 4.8e-28 129.4 252 42.5
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.8e-28 129.4 262 40.1
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 6.3e-28 129.0 307 37.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 6.3e-28 129.0 234 42.7
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 6.3e-28 129.0 293 37.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 6.3e-28 129.0 264 40.9
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.1e-27 128.3 252 42.9
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-27 127.5 383 36.0
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.8e-27 127.5 288 36.8
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 3.1e-27 126.7 283 38.2
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 5.3e-27 125.9 282 40.1
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.3e-27 125.9 262 41.2
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.5e-26 124.4 312 37.2
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.0e-26 124.0 243 40.3
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 4.5e-26 122.9 249 38.6
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 5.9e-26 122.5 215 43.3
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 1.0e-25 121.7 285 36.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 1.0e-25 121.7 285 36.1
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.7e-25 120.9 298 38.6
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.9e-25 120.2 285 36.8
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 2.9e-25 120.2 273 40.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.0e-25 119.4 248 39.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.0e-25 119.4 248 39.5
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.5e-24 117.1 285 36.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.5e-24 117.1 285 36.5
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 7.2e-24 115.5 249 38.6
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 9.4e-24 115.2 303 36.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 4.6e-23 112.8 262 36.3
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.0e-22 111.7 260 37.3
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.0e-22 111.7 262 40.5
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 8.8e-22 108.6 260 37.7
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 5.7e-21 105.9 223 45.7
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 6.3e-20 102.4 255 36.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.2e-20 102.1 261 35.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.8e-19 100.9 221 38.5
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.4e-19 100.5 231 39.8
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 1.5e-18 97.8 205 38.5
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 2.6e-18 97.1 182 41.8
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.7e-18 95.5 267 35.2
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 3.8e-17 93.2 244 36.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-16 91.7 257 31.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 7.2e-16 89.0 222 36.0
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 2.1e-15 87.4 87 59.8
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 5.7e-13 79.3 54 74.1
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 3.7e-12 76.6 245 35.1
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 6.3e-12 75.9 144 40.3
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.7e-10 68.9 66 60.6
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 7.7e-10 68.9 61 62.3
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 7.7e-10 68.9 234 30.3
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.5e-08 63.9 48 72.9
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.5e-08 63.9 238 30.7
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 1.4e-06 58.2 91 47.3
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 2.3e-06 57.4 85 43.5
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 8.8e-06 55.5 299 26.1


User provided reference genes

Program Settings