Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 5.4e-125 451.1 235 100.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 7.1e-93 344.4 236 79.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.3e-83 313.5 239 69.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.5e-82 310.1 239 69.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 5.6e-82 308.1 238 68.5
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.8e-80 303.1 234 65.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.3e-80 301.6 236 68.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 5.3e-80 301.6 236 66.1
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.2e-79 300.4 239 66.1
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.6e-79 299.3 246 63.4
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.7e-78 296.6 242 66.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.7e-78 296.6 242 66.9
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.7e-78 296.6 241 63.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.2e-77 292.4 236 66.1
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.1e-76 289.7 239 61.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.0e-75 287.3 234 62.4
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.9e-75 285.4 239 63.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-75 285.4 240 61.7
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.9e-75 285.4 240 61.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.7e-75 284.6 238 61.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.5e-74 283.5 245 62.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.9e-74 283.1 238 60.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.7e-74 281.6 192 69.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.4e-74 281.2 241 61.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.3e-73 280.4 235 58.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.1e-73 279.6 238 60.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.8e-73 278.5 237 59.5
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.8e-73 278.5 235 61.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.3e-73 278.1 248 57.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-72 277.3 245 60.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.4e-72 276.9 246 61.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.4e-72 276.9 239 59.8
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.8e-72 276.6 191 68.6
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.8e-72 276.6 241 60.6
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.1e-72 275.8 244 59.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-72 275.4 243 58.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.9e-72 274.6 246 60.6
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.9e-72 274.6 244 61.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 6.9e-72 274.6 240 58.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.5e-71 273.5 239 61.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.5e-71 273.5 237 59.9
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.6e-71 272.7 246 58.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.5e-71 271.9 199 65.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.5e-71 271.9 245 58.8
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.6e-71 271.2 238 60.1
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.0e-70 270.8 240 58.3
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-70 270.8 239 59.4
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-70 270.4 237 58.2
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.4e-70 267.7 238 56.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.1e-69 267.3 241 58.5
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.9e-69 266.5 246 56.5
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.5e-69 266.2 239 59.0
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.5e-69 266.2 240 58.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.2e-69 265.8 241 59.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.2e-69 265.4 178 70.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.2e-69 265.4 242 58.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 5.5e-69 265.0 246 56.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.5e-69 265.0 242 58.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.5e-69 265.0 245 58.4
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 5.5e-69 265.0 238 57.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.5e-69 265.0 246 56.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 7.2e-69 264.6 242 56.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 7.2e-69 264.6 242 56.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 9.3e-69 264.2 240 57.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.6e-68 263.5 246 56.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.6e-68 263.5 245 57.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.5e-68 262.3 232 58.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.6e-68 261.9 241 59.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 7.9e-68 261.2 176 69.9
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.0e-67 260.8 247 55.9
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.0e-67 260.8 245 57.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.8e-67 260.0 205 61.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.3e-67 259.6 176 68.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.3e-67 259.6 237 56.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.0e-67 259.2 232 58.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.9e-67 258.8 187 65.2
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.9e-67 258.8 242 56.2
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 5.1e-67 258.5 238 57.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 6.7e-67 258.1 233 56.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.1e-66 257.3 179 67.6
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-66 257.3 240 56.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.1e-66 257.3 240 56.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.9e-66 256.5 232 57.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.5e-66 256.1 253 54.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.5e-66 256.1 179 64.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.5e-66 256.1 232 57.8
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.3e-66 255.8 211 59.2
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.3e-66 255.8 178 68.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.3e-66 255.8 178 67.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.3e-66 255.8 178 67.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 7.4e-66 254.6 241 58.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.2e-65 253.1 240 55.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.8e-65 252.7 239 56.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.8e-65 251.9 162 73.5
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 8.2e-65 251.1 240 55.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 8.2e-65 251.1 240 55.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 235 56.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.8e-64 250.0 251 53.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.4e-64 249.6 232 57.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 3.1e-64 249.2 246 54.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.1e-64 249.2 251 53.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.2e-63 247.3 243 55.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.5e-63 246.9 239 56.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.4e-63 245.7 237 54.9
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.0e-62 244.2 238 56.3
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.3e-62 243.8 235 53.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.7e-62 243.4 235 55.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.7e-62 243.4 235 54.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.7e-62 243.4 241 56.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.9e-62 242.7 251 53.4
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 3.8e-62 242.3 250 54.0
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.0e-62 241.9 231 55.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 8.5e-62 241.1 237 56.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.2e-61 238.8 216 56.5
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.5e-61 238.4 165 66.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.2e-60 237.3 178 64.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.6e-60 236.9 219 54.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.6e-60 235.7 234 53.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-59 233.8 147 73.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.8e-59 233.4 211 53.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.8e-59 231.1 163 65.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.0e-58 229.9 234 52.1
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.7e-58 228.4 151 68.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.7e-57 226.9 242 52.1
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.4e-56 223.8 189 59.3
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.4e-56 223.8 172 59.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.4e-55 219.2 172 58.7
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.9e-55 218.4 172 58.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.9e-54 216.1 234 51.7
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.5e-54 214.9 185 54.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 3.2e-53 212.6 221 51.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.5e-53 211.8 215 53.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 7.2e-53 211.5 210 51.0
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.7e-52 209.5 173 59.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.6e-52 209.1 219 49.3
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-51 206.8 164 63.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 9.7e-50 201.1 227 52.4
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.3e-49 200.7 239 45.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-48 196.4 132 65.9
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.1e-48 196.1 185 54.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.5e-46 188.3 162 58.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-44 183.7 147 63.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.4e-40 169.9 112 70.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.0e-36 154.8 106 67.0
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.8e-35 153.7 172 44.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.0e-32 141.7 150 50.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.0e-31 140.2 213 38.5
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.5e-30 134.8 160 44.4
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 9.5e-29 131.3 151 42.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-26 122.9 76 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.4e-24 117.5 231 33.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 6.8e-19 98.6 155 38.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-15 87.4 86 50.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.3e-11 73.6 102 40.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.3e-11 73.6 87 40.2
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.4e-08 63.5 72 41.7
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.4e-08 63.5 69 43.5
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.7e-06 57.4 64 40.6


User provided reference genes

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