Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 3609.3 1852 100.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2773.8 1858 76.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2772.7 1860 77.5
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 2749.2 1856 76.2
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2724.9 1850 75.4
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 2702.5 1856 75.4
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2672.1 1884 73.5
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2644.0 1871 73.9
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2639.0 1856 74.6
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 2637.4 1859 74.0
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 2520.3 1726 75.3
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2298.9 1863 63.1
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2254.9 1858 62.7
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2198.3 1858 61.5
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2193.3 1862 61.2
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2160.6 1861 59.9
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2143.2 1862 60.0
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2142.5 1859 59.5
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2138.2 1944 58.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2122.1 1862 59.1
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2114.0 1861 58.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2101.6 1860 58.1
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2065.0 1862 57.6
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 2057.7 1861 57.4
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 2052.3 1860 57.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2043.5 1860 57.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2032.7 1862 56.8
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1989.9 1861 56.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1988.8 1861 56.0
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1972.6 1866 55.7
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1966.0 1862 55.4
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1936.8 2005 52.1
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1927.5 2048 51.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1922.5 1969 53.4
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1915.2 1866 53.4
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1910.6 1989 52.7
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1908.6 1864 54.3
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1893.2 1868 53.9
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1891.7 1871 53.8
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1874.4 1703 57.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1867.8 1856 52.8
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1865.9 1711 56.6
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1853.2 1864 51.9
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1851.6 1862 53.7
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1845.9 1865 52.5
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1843.9 1862 53.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1820.8 1877 51.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1815.0 1880 51.1
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1803.1 1864 51.5
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1795.0 1858 51.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1792.3 1857 51.5
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1791.2 1860 51.0
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1786.9 1859 50.6
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1781.9 1858 50.9
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1781.9 1858 50.9
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1781.9 1858 50.9
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1781.9 1858 51.1
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1780.8 1866 51.4
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1779.6 1858 51.0
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1769.2 1855 50.4
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1765.0 1880 50.4
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1753.4 1860 51.7
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1728.8 1864 49.8
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1724.5 1881 49.3
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1719.9 1500 58.9
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1713.0 1871 50.4
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1704.5 1863 49.4
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1689.1 1503 59.0
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1654.8 1859 49.3
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1643.6 1449 59.3
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1618.2 1699 51.0
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1604.0 1970 45.8
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1598.2 1893 48.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1595.9 1650 51.5
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1567.7 1932 45.9
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1520.4 1866 46.7
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1513.0 1868 46.2
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1496.5 1891 46.3
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1401.7 1880 43.0
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1386.7 1367 53.3
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1339.7 1906 42.7
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1330.9 1355 53.0
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1317.0 2080 40.0
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1310.8 1225 55.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1299.3 1384 51.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1266.1 1866 40.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1213.4 1302 51.0
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1196.4 1870 40.1
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1173.7 1181 54.7
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 9.3e-305 1051.2 971 56.8
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 7.9e-272 941.8 1035 49.6
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.7e-267 925.2 612 78.1
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-266 924.5 644 74.4
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.2e-261 907.1 836 56.2
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 3.6e-248 863.2 943 51.0
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.6e-232 811.2 1950 31.3
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-230 805.1 645 64.3
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.6e-225 786.2 534 76.8
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 8.9e-215 752.3 729 55.0
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.0e-214 751.1 941 47.9
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.5e-206 724.9 640 57.3
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 6.9e-191 672.9 845 45.7
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 7.9e-187 659.4 820 45.1
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.9e-180 638.3 1148 37.5
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.3e-175 620.2 439 73.1
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.5e-174 617.1 589 55.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 6.5e-173 613.2 1836 27.5
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.2e-171 609.0 532 58.1
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.8e-167 595.1 794 42.2
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-159 569.3 372 78.8
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.9e-150 537.0 341 81.5
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.8e-127 462.2 430 54.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 3.4e-121 441.4 403 55.6
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 4.9e-120 437.6 433 53.3
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.6e-116 424.1 633 39.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.4e-111 409.5 455 49.2
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 4.0e-106 391.3 303 67.7
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 3.2e-103 381.7 346 58.4
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 2.8e-99 368.6 431 48.0
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.4e-95 356.3 352 54.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.7e-94 352.1 338 54.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.6e-91 342.8 400 48.2
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.4e-81 308.1 441 37.6
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.7e-78 298.9 553 36.9
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.1e-74 285.4 189 75.1
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 5.4e-71 274.6 329 43.8
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.1e-70 272.7 620 31.0
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-67 261.9 211 64.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 6.9e-66 257.7 275 51.3
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.2e-63 248.4 260 51.5
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.7e-62 245.7 226 58.4
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-61 242.3 194 65.5
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 7.4e-52 211.1 267 45.7
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-47 197.2 211 50.7
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.9e-47 196.4 149 65.8
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.6e-46 193.4 277 42.6
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 4.6e-46 191.8 930 24.3
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.1e-46 191.4 147 70.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.4e-45 190.3 201 51.2
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-44 187.2 161 57.1
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.5e-41 176.8 242 44.2
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 2.9e-40 172.6 142 60.6
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 6.5e-40 171.4 132 65.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.2e-39 169.1 104 77.9
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 4.7e-38 165.2 132 62.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.0e-37 164.1 135 64.4
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.3e-37 162.9 131 62.6
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.7e-36 158.3 175 48.6
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-35 156.8 112 71.4
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 3.7e-35 155.6 859 23.9
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 3.7e-35 155.6 186 47.3
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-34 154.1 174 47.1
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 4.2e-31 142.1 137 55.5
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 7.2e-31 141.4 155 48.4
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.1e-30 139.8 225 45.3
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.7e-30 139.4 123 54.5
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 1.2e-25 124.0 111 57.7
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.6e-25 122.9 90 63.3
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 2.1e-22 113.2 171 36.8
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 4.0e-21 109.0 76 71.1
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 6.8e-21 108.2 103 50.5
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 3.7e-19 102.4 93 55.9
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.8e-19 102.1 75 60.0
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 2.9e-16 92.8 52 84.6
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 1.4e-13 84.0 53 77.4
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-12 80.9 127 38.6
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 2.0e-12 80.1 122 34.4
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.0e-12 80.1 80 55.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 7.5e-12 78.2 129 41.1
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 2.2e-11 76.6 75 53.3
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 3.1e-10 72.8 122 35.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 9.1e-10 71.2 91 42.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 9.1e-10 71.2 91 42.9
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 1.6e-09 70.5 64 51.6
Psat7g185600 Pisum sativum HOM05D000747 ORTHO05D004807 4.2e-07 62.4 52 55.8


User provided reference genes

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