Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.3e-269 932.6 491 100.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.6e-158 563.5 449 71.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 5.2e-130 468.8 440 63.6
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.9e-127 460.3 444 61.0
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 7.1e-119 431.8 439 61.0
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 9.2e-119 431.4 446 59.6
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.6e-118 430.6 443 59.8
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 6.0e-118 428.7 446 58.7
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 7.1e-111 405.2 494 52.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.8e-106 390.6 424 57.5
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 3.8e-104 382.9 447 54.1
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.9e-100 370.5 439 50.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.3e-99 367.9 457 51.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 8.1e-99 365.2 462 50.9
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 9.9e-97 358.2 448 51.6
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 9.9e-97 358.2 460 50.0
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.8e-96 356.3 446 50.4
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.9e-96 355.9 448 51.6
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.2e-94 351.3 335 61.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.0e-93 348.2 412 52.4
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 3.0e-93 346.7 435 51.0
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 8.7e-93 345.1 445 48.5
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.1e-92 344.7 461 51.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.5e-92 343.6 432 49.3
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-92 343.6 451 50.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.5e-92 343.6 443 47.2
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.3e-92 342.8 454 48.0
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 7.4e-92 342.0 459 47.3
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.8e-91 340.1 446 49.1
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 8.1e-91 338.6 451 49.0
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.4e-90 337.8 406 52.2
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.1e-90 336.7 427 48.5
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 9.0e-90 335.1 429 50.1
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 4.2e-87 326.2 412 51.9
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.2e-86 324.7 446 49.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.5e-86 323.2 463 46.0
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 6.0e-86 322.4 442 47.3
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 6.0e-86 322.4 463 47.7
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.1e-84 318.2 420 49.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.1e-84 318.2 448 46.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 7.4e-84 315.5 462 46.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.7e-83 313.2 360 53.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.1e-82 311.6 448 45.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.0e-81 307.4 498 43.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.9e-80 303.5 447 46.5
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 8.4e-80 302.0 449 46.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.5e-79 299.3 372 51.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.3e-79 298.5 438 46.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.6e-78 297.7 444 45.7
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-78 297.7 445 44.5
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.0e-77 293.5 442 44.1
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.5e-76 290.4 500 43.4
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.3e-76 290.0 431 44.3
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 4.3e-76 289.7 399 47.6
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.2e-75 287.3 400 45.0
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.8e-75 287.0 447 44.5
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.8e-75 287.0 446 43.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 8.2e-75 285.4 444 44.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 8.2e-75 285.4 426 45.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 8.2e-75 285.4 383 49.1
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.9e-74 282.3 432 44.2
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.6e-73 280.4 444 45.5
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.4e-73 280.0 435 44.6
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 5.9e-73 279.3 358 48.6
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 7.7e-73 278.9 299 54.8
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.0e-72 278.5 347 50.1
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.0e-72 278.5 468 40.8
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.7e-72 277.7 393 44.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.9e-72 276.9 443 44.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.0e-72 276.2 440 44.5
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 6.5e-72 275.8 451 43.2
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-71 275.0 428 42.8
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.9e-71 274.2 434 44.0
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.5e-71 273.9 455 43.1
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.7e-70 270.4 433 42.0
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 3.6e-70 270.0 396 46.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-69 267.3 421 43.9
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.0e-68 264.2 472 40.7
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 3.3e-68 263.5 428 43.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.7e-67 261.2 421 42.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.8e-67 259.6 428 43.7
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-66 258.5 417 42.7
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.3e-66 256.1 417 42.7
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.4e-65 253.4 419 42.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 7.7e-65 252.3 454 42.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 7.7e-65 252.3 454 42.3
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.2e-64 250.8 373 44.5
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 2.5e-63 247.3 348 46.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.6e-62 243.4 387 44.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.7e-62 243.0 429 41.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 6.1e-62 242.7 453 39.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.0e-61 241.9 426 42.5
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.9e-61 240.0 386 43.8
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.7e-61 239.2 360 43.9
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-60 238.4 462 39.6
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.5e-60 238.0 310 48.4
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-60 237.3 363 43.5
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.7e-59 234.6 450 38.9
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 3.8e-56 223.4 434 39.4
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.1e-54 217.6 363 41.9
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.3e-53 214.2 480 35.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 4.0e-53 213.4 396 39.9
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.1e-52 211.8 339 40.7
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-52 210.7 360 42.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.7e-51 206.8 273 45.4
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 6.3e-51 206.1 306 44.1
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 9.1e-50 202.2 231 51.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 3.5e-49 200.3 358 40.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 3.5e-49 200.3 358 40.2
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.2e-48 197.6 406 37.7
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.8e-48 196.8 453 34.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 6.5e-48 196.1 306 42.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.9e-47 194.5 459 36.8
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-46 191.8 249 48.6
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 3.0e-45 187.2 302 45.4
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-44 185.3 203 53.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 3.7e-43 180.3 346 42.5
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.7e-41 174.1 293 43.7
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.3e-37 161.0 298 38.6
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.0e-37 160.6 173 53.2
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 3.4e-36 157.1 142 62.7
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.3e-35 155.2 220 47.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.9e-35 153.3 138 56.5
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.3e-35 152.5 295 40.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-28 132.1 295 34.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.6e-28 131.0 476 29.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.1e-26 123.6 160 49.4
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.1e-22 111.3 134 50.7
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.0e-21 107.1 229 36.2
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.3e-19 102.1 144 44.4
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.2e-19 101.3 144 44.4
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.7e-17 94.4 215 38.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.2e-14 85.5 80 58.8
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.0e-09 66.6 99 41.4
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.3e-08 65.5 122 34.4
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.6e-06 58.5 97 39.2
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.7e-06 57.0 92 38.0
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.2e-06 56.6 192 34.9


User provided reference genes

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