Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 9.9e-288 992.6 468 100.0
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.8e-228 793.5 444 84.7
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.0e-220 768.1 444 82.4
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 4.1e-217 758.1 467 79.2
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 3.5e-216 755.0 461 79.2
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.6e-213 746.1 461 78.5
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 2.8e-213 745.3 476 75.0
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 7.0e-209 730.7 472 76.3
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.6e-208 729.6 471 75.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 5.0e-207 724.5 511 70.1
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.8e-204 716.1 465 74.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.6e-203 712.2 447 76.5
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 8.3e-202 707.2 457 73.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.4e-201 706.4 453 73.3
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.1e-201 704.9 452 74.1
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 4.1e-201 704.9 457 72.9
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 5.4e-201 704.5 453 73.3
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.4e-201 704.5 462 73.4
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 7.0e-201 704.1 453 73.7
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 9.2e-201 703.7 461 74.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.2e-200 703.4 453 73.1
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.5e-200 701.8 452 73.9
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 4.6e-200 701.4 453 72.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.8e-200 700.7 448 73.4
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.3e-199 699.1 457 73.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.0e-199 698.7 456 73.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 3.9e-199 698.4 446 74.0
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 3.9e-199 698.4 460 73.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 8.6e-199 697.2 456 72.8
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.1e-198 696.8 448 73.4
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.1e-198 696.8 444 75.0
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.1e-198 696.8 463 72.1
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.5e-198 696.4 443 74.7
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.5e-198 696.4 460 73.7
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 3.3e-198 695.3 452 72.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.3e-198 694.9 468 71.8
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.2e-197 693.3 452 71.9
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.2e-197 693.3 466 71.2
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.6e-197 693.0 453 71.7
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 3.6e-197 691.8 467 70.9
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.6e-197 691.8 448 74.6
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 4.7e-197 691.4 446 74.2
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-196 690.3 454 71.8
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.4e-196 689.9 458 72.1
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.4e-196 689.9 458 72.1
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.8e-196 689.5 473 70.4
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.8e-196 689.5 473 70.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.3e-196 689.1 456 71.9
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 2.3e-196 689.1 446 74.2
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 2.3e-196 689.1 446 73.5
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.1e-196 688.7 453 72.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.2e-196 688.0 455 72.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 5.2e-196 688.0 400 79.2
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 6.8e-196 687.6 364 85.7
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 8.9e-196 687.2 449 73.5
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.2e-195 686.8 452 73.0
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.2e-195 686.8 450 72.4
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.0e-195 686.0 468 70.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-195 686.0 473 69.6
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 3.4e-195 685.3 453 72.0
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.4e-195 685.3 445 74.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 5.8e-195 684.5 364 85.2
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 5.8e-195 684.5 465 70.3
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 7.5e-195 684.1 453 72.8
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 9.8e-195 683.7 447 73.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.3e-194 683.3 468 70.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.3e-194 683.3 445 72.8
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.3e-194 683.3 443 73.4
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.2e-194 682.6 456 72.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.9e-194 682.2 447 72.5
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.9e-194 682.2 446 72.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 4.9e-194 681.4 442 72.6
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 6.4e-194 681.0 446 72.0
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.3e-194 680.6 442 74.4
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.9e-193 679.5 446 71.7
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 4.1e-193 678.3 446 71.7
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.1e-193 678.3 453 71.7
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.1e-193 678.3 446 71.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 7.0e-193 677.6 444 72.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.6e-192 676.4 446 72.0
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.0e-192 674.5 451 71.6
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 6.0e-192 674.5 448 72.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.7e-191 672.9 443 71.6
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.3e-191 672.5 446 73.1
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.9e-191 671.8 452 71.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.1e-191 671.4 440 71.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 8.6e-191 670.6 445 70.6
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.1e-190 670.2 442 70.8
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.9e-190 669.5 526 63.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.3e-190 668.7 450 70.4
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.3e-190 668.3 445 70.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 9.5e-190 667.2 447 69.8
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 4.7e-189 664.8 446 70.6
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.2e-189 664.5 448 72.1
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.1e-188 663.7 445 70.1
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.1e-188 663.7 442 71.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 3.1e-188 662.1 446 70.2
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.6e-187 659.1 379 78.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 4.4e-187 658.3 452 70.1
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.3e-186 656.8 439 71.8
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.7e-186 656.4 436 72.0
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.1e-185 653.7 439 69.9
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 5.4e-185 651.4 448 70.1
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.6e-184 649.8 463 68.7
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.6e-184 649.8 379 77.8
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.5e-182 643.3 439 72.2
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 6.2e-181 637.9 453 68.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.2e-178 629.4 441 67.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.4e-178 627.5 443 69.8
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 2.4e-177 625.9 448 69.4
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 2.1e-176 622.9 377 74.8
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 4.8e-173 611.7 455 66.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.4e-172 610.1 453 65.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.4e-171 605.1 418 68.2
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.7e-170 603.2 322 84.2
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.2e-170 602.8 345 79.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.2e-169 599.0 437 68.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.6e-168 596.7 324 82.7
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.1e-168 596.3 452 65.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.9e-159 565.5 333 75.7
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 8.7e-159 564.3 389 66.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.8e-157 559.3 289 86.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 2.6e-155 552.7 437 62.7
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.1e-153 547.4 288 84.4
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.9e-151 538.9 287 83.3
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.9e-146 522.7 287 80.5
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 7.9e-144 514.6 352 71.6
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.8e-141 505.4 334 65.6
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.7e-138 496.9 266 83.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.2e-136 490.7 406 63.3
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.8e-124 450.3 376 55.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 5.5e-121 438.7 310 71.0
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.7e-120 435.6 285 67.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.1e-120 435.3 316 65.8
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.3e-117 427.6 307 68.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.5e-110 404.1 376 50.5
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.8e-96 356.7 318 53.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.4e-92 342.4 237 69.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.9e-90 336.3 332 48.2
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.9e-69 266.2 138 86.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.1e-63 248.4 179 64.2
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.4e-53 212.2 121 77.7
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.9e-52 211.1 119 78.2
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.4e-52 209.5 109 83.5
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.6e-48 196.8 138 63.8
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 4.9e-45 186.4 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.0e-31 139.0 83 73.5
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.6e-30 137.5 83 72.3
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 5.9e-30 136.3 101 65.3
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 5.5e-28 129.8 76 75.0
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.1e-12 79.0 52 69.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.3e-08 65.5 123 44.7
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 7.7e-06 56.2 132 36.4


User provided reference genes

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