Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.1e-56 223.0 113 100.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 3.5e-45 184.9 113 85.8
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.7e-29 132.1 109 63.3
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 5.0e-28 127.9 112 59.8
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 2.5e-27 125.6 111 62.2
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.5e-27 125.6 95 65.3
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 5.6e-27 124.4 95 64.2
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 7.3e-27 124.0 95 64.2
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 7.3e-27 124.0 105 61.9
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 2.8e-26 122.1 111 59.5
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 8.0e-26 120.6 95 63.2
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.0e-25 120.2 104 61.5
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.0e-25 120.2 90 66.7
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 1.4e-25 119.8 100 66.0
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 2.3e-25 119.0 101 61.4
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 3.0e-25 118.6 94 63.8
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 4.0e-25 118.2 97 62.9
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.0e-25 118.2 88 68.2
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 5.2e-25 117.9 104 59.6
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 5.2e-25 117.9 101 61.4
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 6.8e-25 117.5 90 68.9
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 8.9e-25 117.1 99 61.6
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 1.2e-24 116.7 99 59.6
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 1.2e-24 116.7 94 63.8
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.2e-24 116.7 95 66.3
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.2e-24 116.7 92 66.3
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.5e-24 116.3 99 61.6
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 2.0e-24 115.9 89 67.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 2.0e-24 115.9 105 59.0
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 4.4e-24 114.8 98 60.2
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 4.4e-24 114.8 94 62.8
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 4.4e-24 114.8 95 65.3
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 4.4e-24 114.8 90 64.4
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 9.8e-24 113.6 92 64.1
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 9.8e-24 113.6 92 64.1
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.3e-23 113.2 98 58.2
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 2.2e-23 112.5 95 60.0
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.9e-23 112.1 98 59.2
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.9e-23 112.1 98 59.2
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 2.9e-23 112.1 98 60.2
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 3.7e-23 111.7 92 60.9
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 3.7e-23 111.7 109 55.0
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 4.9e-23 111.3 94 60.6
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 4.9e-23 111.3 100 59.0
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 6.4e-23 110.9 91 64.8
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 1.1e-22 110.2 90 63.3
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.4e-22 109.8 94 58.5
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.8e-22 109.4 90 64.4
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 2.4e-22 109.0 92 63.0
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 7.0e-22 107.5 92 59.8
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 7.0e-22 107.5 91 61.5
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 2.0e-21 105.9 93 60.2
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 2.7e-21 105.5 94 61.7
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.0e-20 103.6 94 57.4
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.0e-20 103.6 101 55.4
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.3e-20 103.2 91 58.2
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.7e-20 102.8 94 56.4
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 2.3e-20 102.4 94 58.5
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.3e-20 102.4 93 54.8
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 3.0e-20 102.1 93 58.1
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.9e-20 101.7 94 56.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 5.0e-20 101.3 111 49.5
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 5.0e-20 101.3 94 55.3
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.6e-20 100.9 96 57.3
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 8.6e-20 100.5 101 54.5
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 8.6e-20 100.5 90 60.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 8.6e-20 100.5 109 50.5
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 8.6e-20 100.5 94 57.4
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.1e-19 100.1 113 52.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.5e-19 99.0 113 52.2
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 3.3e-19 98.6 97 51.5
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 7.3e-19 97.4 98 52.0
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 2.1e-18 95.9 84 60.7
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.8e-18 95.5 97 53.6
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 4.7e-18 94.7 92 55.4
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 6.2e-18 94.4 93 54.8
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 3.1e-17 92.0 88 59.1
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.5e-16 89.7 99 56.6
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 9.8e-16 87.0 95 50.5
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.7e-15 85.1 88 53.4
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 8.3e-15 84.0 92 50.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 7.0e-14 80.9 98 44.9
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.0e-12 75.5 78 57.7
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 1.2e-10 70.1 105 41.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.2e-10 70.1 86 47.7
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.8e-09 66.2 84 46.4
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 5.8e-08 61.2 63 50.8


User provided reference genes

Program Settings