Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.6e-152 542.0 268 100.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.9e-106 389.0 272 71.3
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 3.2e-105 385.6 269 71.7
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 4.6e-104 381.7 268 69.8
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 5.1e-103 378.3 272 69.5
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.1e-100 370.5 270 69.6
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 8.9e-100 367.5 270 65.2
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.5e-94 349.4 273 66.7
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.4e-89 332.8 268 63.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.6e-88 330.1 238 67.6
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.0e-87 327.4 272 61.0
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.3e-87 327.0 266 66.9
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 3.9e-87 325.5 271 62.0
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 5.1e-87 325.1 279 60.6
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.3e-86 321.2 268 60.1
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 9.6e-86 320.9 269 61.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.3e-85 320.5 268 59.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.3e-85 320.5 272 58.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.3e-85 320.5 245 64.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.1e-85 319.7 272 58.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.6e-85 318.9 271 61.3
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.6e-85 318.9 238 66.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 6.2e-85 318.2 268 60.8
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 8.1e-85 317.8 276 59.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.4e-84 316.2 260 60.4
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.1e-84 315.8 266 59.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 4.0e-84 315.5 248 62.5
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.2e-83 313.9 265 59.2
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.0e-83 313.2 272 58.8
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 3.4e-83 312.4 272 58.8
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 5.8e-83 311.6 268 59.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.7e-82 310.1 277 58.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 6.4e-82 308.1 269 60.2
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.1e-81 307.4 273 57.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.4e-81 307.0 237 69.2
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.9e-81 306.6 254 59.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 5.4e-81 305.1 276 56.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 9.3e-81 304.3 276 56.5
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 9.3e-81 304.3 247 61.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.1e-80 303.1 258 60.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.5e-80 302.4 278 57.2
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.5e-80 302.4 242 62.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 7.9e-80 301.2 235 62.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-79 300.4 238 61.3
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.9e-79 298.9 269 56.5
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 3.9e-79 298.9 268 57.5
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 3.9e-79 298.9 272 57.4
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.1e-79 298.5 226 62.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 6.7e-79 298.1 269 56.9
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-78 297.4 268 57.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 4.3e-78 295.4 277 56.3
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.3e-78 295.4 269 56.5
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 7.4e-78 294.7 258 58.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.3e-77 293.9 272 56.2
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.6e-77 293.5 272 55.5
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.7e-77 292.4 246 58.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.7e-77 292.4 272 55.9
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 4.8e-77 292.0 269 56.1
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.1e-76 290.8 231 61.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.4e-76 289.7 252 56.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.1e-76 289.3 268 56.7
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 4.0e-76 288.9 248 59.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 6.9e-76 288.1 267 53.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.2e-75 287.3 231 60.6
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.5e-75 287.0 246 57.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.6e-75 286.2 246 57.7
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.6e-75 286.2 249 59.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.4e-75 285.8 280 52.9
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 4.5e-75 285.4 249 57.8
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 7.6e-75 284.6 246 56.1
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 9.9e-75 284.3 280 52.9
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.2e-74 283.1 246 56.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.8e-74 282.3 247 59.9
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.9e-74 282.0 249 57.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 6.4e-74 281.6 259 55.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 6.4e-74 281.6 259 55.6
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.9e-73 280.0 225 60.0
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.9e-73 280.0 272 54.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 2.5e-73 279.6 252 53.6
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 4.6e-72 275.4 246 54.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.6e-69 266.9 273 52.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.7e-69 265.8 204 62.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.8e-69 265.4 246 54.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-68 263.5 244 58.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.1e-68 262.7 223 59.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.4e-67 259.2 190 67.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.8e-66 255.8 197 62.9
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.5e-65 253.1 268 51.1
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 5.5e-65 251.9 267 50.6
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.2e-64 250.8 197 62.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.0e-63 246.1 243 52.7
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.1e-62 244.2 237 52.7
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.3e-61 240.7 246 50.8
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 9.0e-60 234.6 221 54.8
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.4e-59 232.6 242 49.2
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.9e-58 229.6 248 46.4
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-57 225.3 186 62.4
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.0e-55 221.1 235 50.2
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.9e-55 219.2 176 63.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-55 218.4 178 62.9
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.2e-53 213.4 218 49.5
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.7e-50 203.8 160 64.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.4e-46 188.3 231 48.5
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.3e-44 182.2 122 69.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-42 175.3 226 49.1
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 9.7e-38 161.4 120 61.7
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-37 160.2 171 49.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.3e-34 151.0 215 37.7
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-32 142.5 254 39.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.8e-31 140.6 153 48.4
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-30 136.0 129 55.8
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.7e-30 134.8 125 53.6
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.5e-27 125.9 116 54.3
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.4e-25 118.2 107 55.1
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-24 115.5 161 44.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.4e-23 114.4 71 70.4
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-19 100.5 122 49.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.9e-18 96.7 83 57.8
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.8e-18 96.3 98 55.1
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-16 90.5 121 47.9
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-16 89.0 71 62.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.0e-15 88.2 62 66.1
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.0e-15 86.7 108 43.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-14 84.3 95 47.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-14 84.0 88 53.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.6e-14 83.6 83 44.6
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 8.3e-13 78.6 77 51.9
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.6e-09 65.9 66 43.9
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.3e-09 65.5 84 40.5
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-07 60.8 144 29.2
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.1e-07 60.1 44 59.1
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 1.2e-06 58.2 195 25.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.4e-06 56.2 31 77.4
Gohir.A03G060800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-06 56.2 72 50.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-06 55.5 48 60.4


User provided reference genes

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