Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 3.2e-220 768.1 375 100.0
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 7.9e-179 630.6 380 80.5
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 7.9e-179 630.6 380 80.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.6e-171 606.3 381 77.7
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.1e-171 605.9 383 78.1
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.8e-170 602.8 381 79.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 2.8e-168 595.5 358 79.9
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.8e-168 594.7 384 76.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 2.4e-167 592.4 358 79.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.3e-167 591.3 380 76.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.5e-166 589.7 367 78.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 5.3e-151 538.1 368 72.0
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.2e-150 537.0 388 68.6
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 5.9e-150 534.6 372 67.7
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 7.7e-150 534.3 379 69.4
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 5.0e-149 531.6 361 70.9
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.9e-148 529.6 368 69.6
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 7.2e-148 527.7 379 70.4
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.6e-147 526.6 382 69.4
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.1e-147 526.2 382 69.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.7e-147 525.8 373 70.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 8.0e-147 524.2 375 68.0
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.0e-146 523.9 345 73.3
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.4e-146 523.5 353 70.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.5e-145 520.0 353 69.4
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 5.7e-145 518.1 357 70.6
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 7.5e-145 517.7 389 66.6
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 9.8e-145 517.3 353 70.3
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.3e-144 516.9 383 67.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.8e-144 515.8 351 69.2
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.7e-144 515.4 366 67.2
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.3e-144 514.6 389 66.3
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.1e-143 513.8 364 67.3
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-143 513.8 388 66.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.4e-143 512.7 369 68.8
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 9.1e-143 510.8 353 69.4
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.7e-142 509.2 345 69.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 3.5e-142 508.8 375 66.9
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 5.9e-142 508.1 368 66.0
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 7.7e-142 507.7 369 66.1
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.0e-141 507.3 353 68.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.0e-141 507.3 353 68.8
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.7e-141 506.5 353 68.6
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.9e-141 505.8 359 69.9
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-141 505.8 400 64.8
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 8.6e-141 504.2 373 67.3
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.5e-140 502.7 383 65.5
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 4.2e-140 501.9 359 66.3
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 4.2e-140 501.9 346 69.4
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 7.2e-140 501.1 369 65.6
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.6e-139 500.0 372 66.4
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 3.6e-139 498.8 343 70.0
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.0e-138 497.3 374 66.6
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.0e-138 497.3 375 65.6
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.4e-138 496.9 343 68.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 3.0e-138 495.7 350 67.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 8.9e-138 494.2 365 66.3
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.2e-137 493.8 342 67.5
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.5e-137 493.4 378 65.6
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.0e-137 493.0 382 63.4
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.6e-137 492.7 382 64.1
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 3.4e-137 492.3 344 66.6
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 5.7e-137 491.5 344 68.0
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.5e-137 491.1 342 69.3
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-136 490.3 356 67.7
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 6.3e-136 488.0 360 66.7
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 8.3e-136 487.6 369 65.6
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.1e-135 487.3 372 64.5
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 9.2e-135 484.2 356 66.3
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.6e-134 483.4 382 62.3
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.0e-133 480.7 369 65.3
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-133 480.3 378 61.4
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.3e-133 480.3 371 63.6
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 2.3e-133 479.6 372 65.6
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.3e-133 479.6 371 63.3
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.9e-133 479.2 400 61.2
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 3.9e-133 478.8 369 64.5
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 5.0e-133 478.4 352 66.5
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.6e-133 478.0 392 61.2
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.1e-132 477.2 358 65.6
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.1e-132 477.2 444 58.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 5.6e-132 474.9 355 65.1
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.1e-131 473.0 374 64.2
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 6.1e-131 471.5 374 63.6
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 8.0e-131 471.1 366 63.1
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-130 468.8 366 62.8
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.7e-128 463.4 349 63.9
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.7e-128 463.4 366 62.6
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 3.7e-128 462.2 402 58.5
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.1e-127 460.7 362 62.2
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.4e-127 460.3 356 61.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.4e-127 459.5 306 69.0
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 5.4e-127 458.4 349 64.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.2e-126 457.2 353 64.6
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.0e-126 456.4 371 62.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.7e-126 456.1 356 61.0
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.6e-126 455.3 413 59.3
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.3e-125 453.8 359 61.0
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.9e-125 452.2 406 56.4
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.9e-124 449.9 360 60.3
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 2.0e-121 439.9 375 58.9
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 7.5e-121 438.0 341 61.9
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-119 432.6 404 54.7
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.6e-118 430.3 355 59.7
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.8e-118 427.9 377 60.2
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.7e-117 426.8 366 60.7
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.3e-116 422.5 355 60.0
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.6e-116 421.8 365 57.8
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.2e-115 420.6 373 57.4
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.6e-115 420.2 381 55.9
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.1e-114 417.5 309 67.6
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.1e-114 417.5 369 56.9
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.6e-113 412.9 328 63.7
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 3.4e-113 412.5 336 58.6
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 7.5e-113 411.4 380 56.8
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.3e-112 407.9 393 56.2
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 8.3e-112 407.9 408 54.7
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 9.2e-111 404.4 350 61.4
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-110 404.1 521 44.5
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 2.1e-110 403.3 370 57.3
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.3e-109 400.6 550 41.6
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.9e-108 396.7 322 58.7
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 8.4e-104 381.3 273 69.2
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 7.8e-102 374.8 269 71.4
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.9e-101 372.5 344 55.5
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 7.3e-100 368.2 259 70.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-98 364.0 273 63.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.3e-96 357.5 384 49.5
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 3.9e-93 345.9 237 68.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.1e-92 344.4 363 47.9
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 3.3e-92 342.8 367 46.9
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.3e-92 342.4 306 56.2
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 4.8e-91 339.0 235 67.7
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.3e-88 330.9 357 50.7
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.7e-86 323.2 237 65.0
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.1e-82 311.2 350 47.7
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 2.1e-75 287.0 206 66.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.8e-75 285.8 285 53.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 7.1e-71 271.9 375 43.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.7e-70 270.0 522 35.6
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.7e-69 265.0 347 44.1
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.4e-66 257.7 197 64.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.9e-55 220.7 294 40.8
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 5.1e-53 212.6 266 44.7
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 4.4e-52 209.5 196 49.5
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.9e-39 167.5 370 31.9
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.9e-39 167.5 128 64.1
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.2e-38 164.9 330 31.5
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 8.0e-38 162.2 304 32.6
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.6e-36 157.1 172 48.8
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.6e-36 157.1 134 59.7
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 4.5e-33 146.4 81 81.5
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.3e-27 125.9 117 52.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 4.1e-18 96.7 63 69.8
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.3e-16 90.9 56 71.4
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 3.9e-16 90.1 47 87.2
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.0e-13 80.1 43 81.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.6e-09 68.2 135 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 4.3e-07 60.1 35 62.9


User provided reference genes

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