Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.3e-160 569.7 299 100.0
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.4e-130 469.2 304 79.6
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.3e-128 463.4 300 80.3
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 5.1e-128 461.5 303 80.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-127 460.3 306 78.8
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-127 459.9 304 78.9
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 3.3e-127 458.8 305 80.0
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 9.0e-125 450.7 305 77.4
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 5.8e-116 421.4 304 75.3
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.3e-115 420.2 306 74.5
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.9e-115 419.1 305 75.7
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 3.8e-115 418.7 303 73.6
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.1e-114 417.2 298 71.1
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.4e-114 416.8 293 75.1
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.4e-114 416.8 293 75.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.4e-114 416.0 305 73.8
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.2e-114 415.6 293 75.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.2e-114 415.6 303 73.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.1e-114 414.5 293 72.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.3e-114 414.1 293 74.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.3e-114 414.1 293 74.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.2e-113 413.7 297 69.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.8e-112 409.8 293 72.7
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 3.0e-112 409.1 303 71.3
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 3.0e-112 409.1 295 71.5
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 5.1e-112 408.3 296 70.6
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-111 406.8 307 73.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 4.3e-111 405.2 298 72.1
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.6e-111 404.8 296 67.6
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.6e-111 404.8 292 69.5
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.8e-110 402.5 296 70.3
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.8e-110 401.7 290 71.0
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 6.2e-110 401.4 293 71.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.1e-109 400.6 281 72.6
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-109 400.6 305 73.4
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 4.0e-109 398.7 297 69.7
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 6.9e-109 397.9 297 70.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.5e-108 396.7 302 67.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 2.0e-108 396.4 303 69.0
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.6e-108 396.0 296 69.3
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 3.4e-108 395.6 302 71.9
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 5.8e-108 394.8 295 72.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 7.6e-108 394.4 303 70.3
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 2.2e-107 392.9 299 70.9
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.2e-107 392.9 297 69.4
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.9e-107 391.7 295 69.8
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.1e-106 390.6 297 70.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.2e-106 389.0 295 69.2
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 3.2e-106 389.0 295 69.2
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.2e-105 387.1 298 68.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 4.6e-105 385.2 303 70.3
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 7.9e-105 384.4 302 68.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.8e-104 383.3 303 67.3
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.1e-104 381.7 302 68.5
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.1e-104 381.7 302 68.5
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 6.7e-104 381.3 304 68.1
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 3.3e-103 379.0 296 66.6
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.7e-102 375.6 287 64.5
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 3.7e-102 375.6 294 66.0
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 8.2e-102 374.4 293 68.3
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.8e-101 373.2 298 69.1
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.3e-101 371.7 293 69.6
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 2.6e-100 369.4 293 68.9
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 3.4e-100 369.0 298 64.1
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 3.8e-99 365.5 293 66.6
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 4.9e-99 365.2 293 67.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.4e-98 363.6 298 66.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.4e-98 363.6 297 65.7
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 4.6e-97 358.6 290 65.5
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.0e-96 357.5 292 58.9
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.8e-96 356.7 297 64.6
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.9e-96 355.5 295 61.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 6.7e-96 354.8 302 61.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.5e-95 353.6 308 62.3
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.5e-95 353.6 295 61.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 3.3e-95 352.4 273 65.2
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 5.7e-95 351.7 311 63.0
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 9.7e-95 350.9 302 63.9
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 9.7e-95 350.9 252 72.6
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.3e-94 350.5 291 64.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.6e-94 350.1 311 62.7
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 4.8e-94 348.6 311 61.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 1.1e-93 347.4 296 63.2
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 1.1e-93 347.4 296 63.2
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.1e-93 347.4 303 59.4
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.4e-93 347.1 311 62.4
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.8e-93 346.7 311 62.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.0e-92 343.2 221 76.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 2.6e-92 342.8 236 76.3
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 2.6e-92 342.8 296 60.8
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 2.6e-92 342.8 351 57.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 7.7e-92 341.3 292 60.6
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 2.9e-91 339.3 297 63.3
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.8e-91 339.0 299 63.9
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 5.0e-91 338.6 295 61.4
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.5e-90 336.3 299 61.5
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 3.2e-90 335.9 299 59.2
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.2e-90 335.5 308 61.0
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.6e-89 333.6 293 60.4
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.6e-89 333.6 298 59.7
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.4e-88 330.5 294 61.6
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 3.9e-88 328.9 291 59.1
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 5.1e-88 328.6 305 59.3
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.8e-86 322.8 281 60.1
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 4.8e-86 322.0 280 61.8
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-85 320.9 321 61.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.8e-85 320.1 302 60.3
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.4e-85 319.7 254 67.3
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 6.9e-85 318.2 267 65.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.4e-82 310.5 294 53.4
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.4e-82 310.5 290 54.1
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.9e-82 310.1 300 58.0
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 5.5e-82 308.5 294 52.7
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 9.4e-82 307.8 296 59.1
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 4.7e-81 305.4 298 57.0
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 7.9e-81 304.7 293 54.6
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.8e-80 303.5 229 72.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.1e-77 294.3 212 67.0
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 2.0e-71 273.5 267 55.1
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 3.2e-66 256.1 289 53.3
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 8.8e-64 248.1 186 70.4
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.3e-62 244.2 291 48.5
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.7e-62 243.8 286 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 6.5e-59 231.9 195 59.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 2.5e-58 229.9 224 54.9
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.7e-52 209.9 309 41.1
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.7e-46 189.5 203 52.7
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 5.0e-43 179.1 253 41.5
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.2e-41 174.5 273 44.3
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 2.9e-38 163.3 100 79.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.7e-33 146.0 134 59.0
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.7e-33 146.0 134 59.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 4.7e-33 146.0 123 61.0
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 7.8e-28 128.6 195 34.9
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-24 117.5 68 77.9
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.3e-24 117.1 168 35.7
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.3e-22 111.3 66 72.7
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.1e-21 108.2 193 32.1
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.1e-20 104.0 96 64.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-18 98.2 64 71.9
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.3e-18 96.3 62 72.6
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-17 93.6 77 58.4
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 3.4e-15 86.7 134 53.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 8.4e-14 82.0 119 44.5
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.1e-12 77.4 50 70.0
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 3.5e-12 76.6 116 44.8
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 7.8e-12 75.5 43 83.7
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.0e-11 73.6 39 82.1
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 3.0e-11 73.6 55 61.8
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.9e-10 70.9 45 64.4
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.6e-10 69.3 45 64.4


User provided reference genes

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