Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.8e-280 968.0 506 100.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.4e-186 656.0 517 68.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.6e-185 652.5 518 68.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.8e-179 632.5 513 66.9
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.1e-178 628.6 520 64.0
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.0e-177 626.3 520 63.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-172 610.5 517 66.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.2e-169 600.5 516 64.5
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-155 553.5 520 59.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 4.7e-126 455.7 521 52.0
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 7.5e-124 448.4 513 52.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 8.3e-123 444.9 527 50.3
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.1e-122 444.5 526 50.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.2e-118 428.7 520 49.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 3.7e-115 419.5 525 46.7
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 7.8e-113 411.8 424 54.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.6e-112 408.7 528 46.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.1e-111 407.9 527 47.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.5e-111 406.8 471 49.3
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.6e-111 405.6 527 46.7
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 7.3e-111 405.2 520 49.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.0e-109 399.4 525 45.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.7e-107 392.9 472 47.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.5e-105 386.3 523 44.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.9e-103 380.6 527 44.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-102 377.1 533 45.0
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-102 377.1 521 43.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 6.8e-101 372.1 533 43.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.4e-99 365.5 528 44.5
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.2e-98 362.8 533 43.9
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.7e-96 357.5 530 43.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.0e-96 356.7 501 44.5
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.6e-94 349.7 525 41.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.6e-94 349.7 480 44.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-93 348.2 517 44.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-93 347.4 485 43.9
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.1e-93 346.7 523 41.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.0e-93 346.3 508 43.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.9e-93 345.5 482 42.3
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.2e-92 344.7 442 45.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.2e-92 344.7 524 43.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.2e-92 344.7 524 43.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.3e-91 341.3 436 44.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.3e-91 341.3 526 42.6
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.2e-90 336.7 526 42.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.3e-88 331.3 508 40.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-88 331.3 490 42.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.0e-88 330.1 535 40.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.6e-84 315.5 526 40.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 5.5e-82 309.3 529 40.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 6.7e-80 302.4 531 37.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.7e-80 302.4 542 38.7
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 7.4e-79 298.9 518 39.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.8e-78 297.0 531 37.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 3.7e-78 296.6 301 55.1
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.8e-77 294.3 508 38.2
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.0e-77 293.1 470 37.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.9e-77 292.4 501 37.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.6e-73 281.2 524 37.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.1e-71 275.0 519 36.8
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.2e-68 265.0 527 34.9
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-66 258.1 455 36.9
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.6e-65 254.6 473 37.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.1e-65 254.2 509 36.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.6e-65 253.4 466 36.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 5.1e-64 249.6 489 34.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.1e-61 240.0 535 34.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.2e-60 238.4 524 32.6
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.0e-60 237.7 486 34.4
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.2e-59 234.2 447 35.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.9e-59 233.8 492 35.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.8e-59 233.4 492 35.4
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.8e-59 233.4 490 33.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 8.5e-59 232.3 536 33.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.4e-58 231.5 533 33.8
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.2e-58 230.3 408 36.3
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-58 230.3 281 47.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.2e-58 229.2 272 48.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 9.4e-58 228.8 530 32.8
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-57 228.0 294 44.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.6e-57 226.5 493 33.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 7.9e-57 225.7 519 34.1
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.4e-56 224.9 269 46.8
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.1e-55 221.9 493 32.3
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.4e-55 219.9 482 32.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 5.7e-55 219.5 527 30.9
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.7e-54 218.0 491 33.2
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.7e-54 216.9 255 51.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.4e-53 214.9 535 32.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.8e-53 214.5 388 37.4
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.4e-53 214.2 466 33.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.4e-53 214.2 504 32.3
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 4.1e-53 213.4 504 32.3
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.9e-53 212.6 513 31.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 6.9e-53 212.6 501 33.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-52 210.7 384 34.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.6e-52 210.7 510 32.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.4e-52 210.3 423 34.3
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.9e-52 209.5 411 36.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-51 206.8 242 49.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 5.0e-51 206.5 516 32.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 8.5e-51 205.7 523 31.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.5e-51 205.7 527 31.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.2e-49 201.8 470 33.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.7e-49 199.9 387 36.4
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.7e-49 199.9 250 45.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.1e-49 199.5 417 33.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.4e-48 198.4 486 31.7
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.0e-48 197.2 503 32.0
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 8.8e-48 195.7 435 33.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.6e-47 194.1 501 31.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 5.7e-47 193.0 486 31.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.7e-47 192.2 371 33.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.2e-46 191.0 501 31.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.2e-46 191.0 501 31.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.8e-46 190.7 496 31.2
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.7e-46 190.3 392 34.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.4e-45 188.3 474 30.8
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.1e-45 187.2 398 32.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.2e-44 185.3 534 30.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.6e-44 184.1 484 30.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.6e-44 184.1 490 30.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.0e-43 182.2 486 30.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-42 178.7 406 31.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.8e-40 171.4 404 30.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.3e-40 171.0 498 31.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.0e-40 170.2 442 32.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.2e-39 168.7 538 27.7
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.0e-39 167.9 247 40.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.6e-39 167.5 403 31.0
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.3e-39 167.2 478 29.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 9.7e-39 165.6 408 29.7
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.7e-38 163.7 546 29.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 4.1e-37 160.2 452 27.9
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.3e-37 159.8 427 30.4
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.7e-36 157.5 281 38.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.5e-36 156.8 242 39.7
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.0e-35 155.6 401 30.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.7e-35 154.8 390 29.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.2e-35 154.5 252 44.0
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.5e-34 149.8 268 39.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 9.4e-34 149.1 485 27.4
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.7e-33 147.5 178 47.2
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.6e-33 147.1 474 26.2
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.8e-32 144.8 292 35.6
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-32 144.4 453 27.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.8e-32 142.9 406 30.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 8.8e-32 142.5 410 29.3
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 8.8e-32 142.5 178 46.6
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 9.8e-31 139.0 409 29.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 9.8e-31 139.0 478 26.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.3e-30 138.7 402 29.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.7e-30 138.3 402 28.1
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.7e-30 137.1 252 36.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.4e-29 133.3 259 37.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.5e-26 123.2 469 27.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-24 117.5 216 39.4
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.4e-23 113.6 259 32.4
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 7.0e-21 106.3 128 44.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.7e-20 104.4 277 29.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-19 102.4 116 44.0
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 1.9e-18 98.2 122 50.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 5.6e-18 96.7 258 32.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.0e-17 92.8 265 31.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.8e-16 91.7 225 29.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.2e-15 89.0 144 39.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-15 88.2 178 38.2
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 6.4e-14 83.2 225 30.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.4e-13 82.0 167 33.5
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.2e-13 80.9 198 31.3
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.3e-11 75.5 267 25.5


User provided reference genes

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