Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr24g0392771 Lupinus albus HOM05D002570 ORTHO05D002689 8.0e-34 146.4 66 100.0
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.6e-16 88.2 49 79.6
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 9.8e-16 86.3 52 73.1
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 3.7e-15 84.3 53 75.5
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 2.0e-13 78.6 47 70.2
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 3.5e-13 77.8 58 60.3
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 3.5e-13 77.8 49 69.4
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 7.8e-13 76.6 47 72.3
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 7.8e-13 76.6 46 71.7
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 1.7e-12 75.5 47 70.2
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 1.7e-12 75.5 47 70.2
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 2.9e-12 74.7 49 69.4
Sabra01G0026300 Salix brachista HOM05D002570 ORTHO05D002689 2.9e-12 74.7 47 70.2
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 5.0e-12 73.9 45 66.7
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 5.0e-12 73.9 58 56.9
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 8.6e-12 73.2 48 64.6
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 8.6e-12 73.2 58 56.9
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.1e-11 72.8 47 63.8
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.1e-11 72.8 58 55.2
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-11 72.4 50 66.0
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-11 72.4 50 66.0
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.9e-11 72.0 50 66.0
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.9e-11 72.0 48 64.6
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.9e-11 72.0 48 60.4
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.5e-11 71.6 47 61.7
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.5e-11 71.6 47 61.7
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.5e-11 71.6 47 66.0
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.5e-11 71.6 47 61.7
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.3e-11 70.9 58 60.3
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 4.3e-11 70.9 58 56.9
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 4.3e-11 70.9 58 56.9
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.3e-11 70.9 58 55.2
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 7.3e-11 70.1 48 62.5
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 7.3e-11 70.1 47 66.0
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 7.3e-11 70.1 47 66.0
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 9.5e-11 69.7 47 59.6
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.2e-10 69.3 47 61.7
DCAR_016323 Daucus carota HOM05D002570 ORTHO05D002689 1.2e-10 69.3 58 53.4
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 1.2e-10 69.3 48 64.6
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 2.8e-10 68.2 55 49.1
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.8e-10 68.2 55 49.1
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 2.8e-10 68.2 48 64.6
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 4.7e-10 67.4 55 47.3
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 8.0e-10 66.6 55 52.7
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.0e-09 66.2 47 66.0
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.0e-09 66.2 47 66.0
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 1.4e-09 65.9 49 59.2
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-09 65.9 49 59.2
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-09 65.9 49 59.2
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.4e-09 65.9 49 59.2
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 2.3e-09 65.1 47 53.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.1e-09 64.7 45 60.0
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.1e-09 64.7 45 60.0
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 3.1e-09 64.7 53 56.6
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.0e-09 64.3 48 58.3
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.0e-09 64.3 48 58.3
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.0e-09 64.3 48 58.3
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 4.0e-09 64.3 42 64.3
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 5.2e-09 63.9 55 47.3
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 8.9e-09 63.2 47 51.1
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 8.9e-09 63.2 46 58.7
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 8.9e-09 63.2 48 54.2
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 1.2e-08 62.8 48 58.3
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 2.6e-08 61.6 47 59.6
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 4.4e-08 60.8 46 56.5
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 9.8e-08 59.7 49 51.0
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 1.3e-07 59.3 48 50.0
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.3e-07 59.3 44 59.1
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.7e-07 58.9 44 56.8
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.2e-07 58.5 64 46.9
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 8.3e-07 56.6 39 59.0
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 8.3e-07 56.6 61 49.2
MELO3C028978.2 Cucumis melo HOM05D002570 ORTHO05D002689 8.3e-07 56.6 49 46.9
CiPaw.02G024300 Carya illinoinensis HOM05D002570 ORTHO05D002689 1.4e-06 55.8 47 48.9
Lalb_Chr14g0376161 Lupinus albus HOM05D002570 ORTHO05D002689 1.4e-06 55.8 28 82.1
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 1.9e-06 55.5 53 50.9
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 1.9e-06 55.5 48 50.0
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 4.1e-06 54.3 44 47.7
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 5.4e-06 53.9 48 54.2
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 5.4e-06 53.9 45 53.3
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 7.0e-06 53.5 44 54.5
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 7.0e-06 53.5 55 49.1
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 7.0e-06 53.5 44 47.7
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 7.0e-06 53.5 44 47.7
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 7.0e-06 53.5 43 51.2


User provided reference genes

Program Settings