Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 1.3e-167 594.0 581 100.0
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 1.4e-73 281.6 185 71.9
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 5.3e-73 279.6 221 62.0
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 9.1e-73 278.9 286 64.3
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.3e-71 275.0 284 70.8
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.1e-70 271.9 285 69.1
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.0e-68 265.4 286 59.8
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.3e-66 258.5 206 63.1
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 4.8e-66 256.5 186 67.7
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 2.5e-62 244.2 318 54.1
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 9.7e-59 232.3 276 65.9
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.4e-57 228.4 183 60.7
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 2.6e-56 224.2 202 57.4
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 5.9e-56 223.0 189 58.7
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 1.9e-54 218.0 160 63.8
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.0e-52 212.2 180 57.2
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 9.7e-51 205.7 279 52.7
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 3.7e-50 203.8 189 50.3
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.4e-49 201.8 154 68.2
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 5.9e-48 196.4 283 59.0
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.3e-47 195.3 274 62.0
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 5.0e-47 193.4 274 62.0
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.1e-46 192.2 189 46.6
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.2e-46 190.7 189 47.1
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 7.2e-46 189.5 175 52.6
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 8.0e-45 186.0 180 48.9
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.8e-44 184.9 183 47.5
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 6.8e-44 183.0 207 44.0
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 8.8e-44 182.6 275 59.3
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.2e-43 182.2 189 45.0
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.2e-43 182.2 173 51.4
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.2e-43 182.2 190 45.3
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.5e-43 181.8 151 57.6
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 9.8e-43 179.1 173 48.6
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 9.8e-43 179.1 183 48.1
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 2.2e-42 177.9 175 48.6
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 8.3e-42 176.0 187 46.0
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 4.1e-41 173.7 188 51.1
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 4.1e-41 173.7 188 51.1
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.3e-39 168.7 188 48.9
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.3e-39 167.9 159 52.2
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.5e-38 165.2 154 53.9
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 2.5e-38 164.5 191 49.7
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 3.3e-38 164.1 179 44.7
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.3e-38 164.1 187 47.1
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 5.5e-38 163.3 188 47.9
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 3.6e-37 160.6 186 40.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.7e-37 160.2 201 44.3
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.6e-35 154.5 189 48.7
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.7e-34 151.8 115 58.3
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.2e-34 151.4 225 36.4
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 2.8e-34 151.0 145 50.3
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 2.4e-33 147.9 169 42.6
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 5.4e-33 146.7 182 41.8
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 5.4e-33 146.7 202 39.6
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.2e-32 145.6 180 45.6
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.6e-32 145.2 178 44.4
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 2.0e-32 144.8 184 44.6
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 3.5e-32 144.1 180 45.0
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.3e-31 142.1 180 43.9
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.3e-31 142.1 175 44.0
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.7e-31 141.7 180 43.9
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 1.7e-31 141.7 181 43.6
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.7e-31 141.7 322 42.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.7e-31 141.7 179 43.0
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.7e-31 141.7 175 45.7
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 2.9e-31 141.0 179 43.6
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 5.0e-31 140.2 181 42.5
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 6.6e-31 139.8 110 58.2
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.1e-30 139.0 182 40.1
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 2.5e-30 137.9 110 57.3
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 3.3e-30 137.5 180 43.3
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 3.3e-30 137.5 180 43.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 5.6e-30 136.7 175 41.7
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 1.2e-29 135.6 178 42.1
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 2.1e-29 134.8 212 37.3
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.7e-29 133.7 182 41.8
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 6.1e-29 133.3 181 42.5
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.0e-28 132.5 186 42.5
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.8e-28 131.7 217 38.7
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.8e-28 131.7 110 57.3
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 3.1e-28 131.0 192 41.1
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 5.2e-28 130.2 138 48.6
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 5.2e-28 130.2 189 40.7
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 8.9e-28 129.4 105 56.2
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.2e-27 129.0 184 39.1
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.2e-27 129.0 98 59.2
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.5e-27 128.6 184 40.2
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 9.8e-27 125.9 104 54.8
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 1.7e-26 125.2 113 51.3
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.9e-26 124.4 185 38.4
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 4.9e-26 123.6 188 42.0
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 8.3e-26 122.9 104 53.8
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 4.1e-25 120.6 186 39.2
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 4.1e-25 120.6 213 37.1
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 5.4e-25 120.2 190 38.9
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.0e-25 119.8 213 36.2
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 7.0e-25 119.8 190 38.9
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 7.0e-25 119.8 190 38.9
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 9.2e-25 119.4 189 37.0
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 1.2e-24 119.0 113 50.4
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 2.0e-24 118.2 110 50.0
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 2.0e-24 118.2 133 42.1
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.7e-24 117.9 199 36.2
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.7e-24 117.9 199 36.2
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 3.0e-23 114.4 106 49.1
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.0e-23 114.4 202 36.6
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 4.3e-22 110.5 100 52.0
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 1.6e-21 108.6 178 35.4
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.1e-21 108.2 188 36.2
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.8e-21 107.8 188 35.1
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.3e-20 104.8 101 47.5
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 8.9e-20 102.8 123 43.1
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 1.2e-19 102.4 169 38.5
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 1.1e-17 95.9 142 38.7
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.2e-16 92.4 110 40.9
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 4.0e-12 77.4 66 59.1
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.2e-08 65.9 65 52.3
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.6e-08 65.5 110 37.3
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 7.8e-08 63.2 154 25.3
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 8.6e-07 59.7 163 28.2
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.1e-06 59.3 127 30.7
CANSAT78G2527 Cannabis sativa HOM05D007128 ORTHO05D009059 1.9e-06 58.5 189 22.8
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 3.3e-06 57.8 168 26.8
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 3.3e-06 57.8 96 28.1
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 4.3e-06 57.4 174 24.7
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 7.3e-06 56.6 123 33.3
Nitab4.5_0000131g0200 Nicotiana tabacum HOM05D007402 ORTHO05D003673 7.3e-06 56.6 96 27.1
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 9.6e-06 56.2 160 29.4
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 9.6e-06 56.2 160 29.4
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 9.6e-06 56.2 159 22.6
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 9.6e-06 56.2 159 22.6


User provided reference genes

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